miRNA display CGI


Results 41 - 60 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29649 5' -63.6 NC_006151.1 + 95783 0.66 0.569661
Target:  5'- aUGCCGcGCAUGUucaGCaCggcgCGaCGUCCGCGu -3'
miRNA:   3'- -ACGGCuCGUACG---CG-Ga---GC-GCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 48966 0.66 0.569661
Target:  5'- cGCCuGGac-GCGCCUCacgGCGCCCGa- -3'
miRNA:   3'- aCGGcUCguaCGCGGAG---CGCGGGCgc -5'
29649 5' -63.6 NC_006151.1 + 84655 0.66 0.569661
Target:  5'- gGCCGcgGGCGcGCGCCUCGagGCCgagGUGg -3'
miRNA:   3'- aCGGC--UCGUaCGCGGAGCg-CGGg--CGC- -5'
29649 5' -63.6 NC_006151.1 + 129005 0.66 0.569661
Target:  5'- cGCCGugaugcccuucAGCGcgGCGUCggcCGCGCgCGCGu -3'
miRNA:   3'- aCGGC-----------UCGUa-CGCGGa--GCGCGgGCGC- -5'
29649 5' -63.6 NC_006151.1 + 132305 0.66 0.569661
Target:  5'- gGuCCGcguGCAgGCGCCacgagagcUCGCGCgCCGUGg -3'
miRNA:   3'- aC-GGCu--CGUaCGCGG--------AGCGCG-GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 64914 0.66 0.560006
Target:  5'- cGCgCGAGCAccuccacgGCGUaCUCGCGCgucagcgccuggCCGCGc -3'
miRNA:   3'- aCG-GCUCGUa-------CGCG-GAGCGCG------------GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 58127 0.66 0.560006
Target:  5'- gGUCGcgucGCccGCGCCguaCGCGgCCGCGu -3'
miRNA:   3'- aCGGCu---CGuaCGCGGa--GCGCgGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 131842 0.66 0.550397
Target:  5'- gUGauGAGCGggGCgGCCgagacgCGCGCCgGCGg -3'
miRNA:   3'- -ACggCUCGUa-CG-CGGa-----GCGCGGgCGC- -5'
29649 5' -63.6 NC_006151.1 + 135101 0.66 0.550397
Target:  5'- gGCCGGGCggGCGgCgguaGCGCgCGgGg -3'
miRNA:   3'- aCGGCUCGuaCGCgGag--CGCGgGCgC- -5'
29649 5' -63.6 NC_006151.1 + 4022 0.66 0.550397
Target:  5'- gGCCGcGGCGUagguccagGCgGCCUCGCGggCGCGg -3'
miRNA:   3'- aCGGC-UCGUA--------CG-CGGAGCGCggGCGC- -5'
29649 5' -63.6 NC_006151.1 + 38689 0.66 0.550397
Target:  5'- -cCCGGcGCAaGCGCCgcucccucggacUCGgGCCCGCu -3'
miRNA:   3'- acGGCU-CGUaCGCGG------------AGCgCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 57073 0.66 0.550397
Target:  5'- -aCCGGGCcgGCGCCgcgcagGCGCaCGCa -3'
miRNA:   3'- acGGCUCGuaCGCGGag----CGCGgGCGc -5'
29649 5' -63.6 NC_006151.1 + 65503 0.66 0.550397
Target:  5'- cGCCG-GCGgagcGCGCCUC-C-UCCGCGg -3'
miRNA:   3'- aCGGCuCGUa---CGCGGAGcGcGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 94255 0.66 0.550397
Target:  5'- cGCUGAGCGcgGCcacguccuugGCgUCGuCGCCCaGCGg -3'
miRNA:   3'- aCGGCUCGUa-CG----------CGgAGC-GCGGG-CGC- -5'
29649 5' -63.6 NC_006151.1 + 115577 0.66 0.550397
Target:  5'- cGCgCGGGCAgGuCGCgCUCGagcaGCUCGCGc -3'
miRNA:   3'- aCG-GCUCGUaC-GCG-GAGCg---CGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 117785 0.66 0.550397
Target:  5'- -uCCGGGCGggGCGCCaCGC-CCgGCGg -3'
miRNA:   3'- acGGCUCGUa-CGCGGaGCGcGGgCGC- -5'
29649 5' -63.6 NC_006151.1 + 135863 0.66 0.550397
Target:  5'- -aCCGGGCAcGUgGCCa-GCGUCCGCGu -3'
miRNA:   3'- acGGCUCGUaCG-CGGagCGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 118942 0.66 0.551356
Target:  5'- cGCCGAcGCGgcgcugucgcuggagGCGCUcgUCGcCGCCgGCGu -3'
miRNA:   3'- aCGGCU-CGUa--------------CGCGG--AGC-GCGGgCGC- -5'
29649 5' -63.6 NC_006151.1 + 82170 0.66 0.554235
Target:  5'- aGCCGAGCGccgggggcgcgaucaUGCGCaUC-CGCUCgGCGg -3'
miRNA:   3'- aCGGCUCGU---------------ACGCGgAGcGCGGG-CGC- -5'
29649 5' -63.6 NC_006151.1 + 110181 0.66 0.559043
Target:  5'- cGCC--GCGUGcCGCCUgauagcgCGcCGCCUGCGg -3'
miRNA:   3'- aCGGcuCGUAC-GCGGA-------GC-GCGGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.