miRNA display CGI


Results 101 - 120 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29649 5' -63.6 NC_006151.1 + 97459 0.66 0.521897
Target:  5'- cGCCGAGCucgggcagGCGgCUCacCGCCaCGUGg -3'
miRNA:   3'- aCGGCUCGua------CGCgGAGc-GCGG-GCGC- -5'
29649 5' -63.6 NC_006151.1 + 59355 0.66 0.521897
Target:  5'- gGCCGcGCGcacgggGCGCCgCGCGgCCGUc -3'
miRNA:   3'- aCGGCuCGUa-----CGCGGaGCGCgGGCGc -5'
29649 5' -63.6 NC_006151.1 + 56383 0.66 0.521897
Target:  5'- cUGCUGcacGUcgGCGCCaCGCGCgCGCu -3'
miRNA:   3'- -ACGGCu--CGuaCGCGGaGCGCGgGCGc -5'
29649 5' -63.6 NC_006151.1 + 117268 0.66 0.521897
Target:  5'- gGCCGcGCGcgGcCGCCgccgacagCGCGCgCGCGa -3'
miRNA:   3'- aCGGCuCGUa-C-GCGGa-------GCGCGgGCGC- -5'
29649 5' -63.6 NC_006151.1 + 39848 0.66 0.521897
Target:  5'- gGCC--GCcgGgGCCUCGCcgaGCuCCGCGg -3'
miRNA:   3'- aCGGcuCGuaCgCGGAGCG---CG-GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 95207 0.66 0.535131
Target:  5'- aUGCCcagcGAGCGgcUGCGCCgCacgcccucgaccgagGCGCCCGuCGg -3'
miRNA:   3'- -ACGG----CUCGU--ACGCGGaG---------------CGCGGGC-GC- -5'
29649 5' -63.6 NC_006151.1 + 85130 0.66 0.540839
Target:  5'- cGCUGuGCcUGCaCCUgGUGCaCCGCGu -3'
miRNA:   3'- aCGGCuCGuACGcGGAgCGCG-GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 70645 0.66 0.550397
Target:  5'- gGCCGcGCGcgagGCGCCcguccucaCGCGCgCCGCc -3'
miRNA:   3'- aCGGCuCGUa---CGCGGa-------GCGCG-GGCGc -5'
29649 5' -63.6 NC_006151.1 + 58673 0.66 0.550397
Target:  5'- gGCCGc-CAUgaccGCGCCgugCGCGCCgCGCc -3'
miRNA:   3'- aCGGCucGUA----CGCGGa--GCGCGG-GCGc -5'
29649 5' -63.6 NC_006151.1 + 13181 0.66 0.550397
Target:  5'- cGCCGcGGC---CGUCUCgGgGCCCGCGg -3'
miRNA:   3'- aCGGC-UCGuacGCGGAG-CgCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 17470 0.66 0.549439
Target:  5'- uUGCCGcGGCGUGU-CCUCgucggcgGCGCgCCGCu -3'
miRNA:   3'- -ACGGC-UCGUACGcGGAG-------CGCG-GGCGc -5'
29649 5' -63.6 NC_006151.1 + 56057 0.66 0.544656
Target:  5'- cGCUGAcGC-UGCGCCUCgagagcggcgagacgGUGuCCUGCGa -3'
miRNA:   3'- aCGGCU-CGuACGCGGAG---------------CGC-GGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 133403 0.66 0.540839
Target:  5'- gGCCGAGCggGCgGUCUUG-GC-CGCGg -3'
miRNA:   3'- aCGGCUCGuaCG-CGGAGCgCGgGCGC- -5'
29649 5' -63.6 NC_006151.1 + 130523 0.66 0.540839
Target:  5'- gGCgCGGGCGUcGCGUacaCGCcCCCGCGc -3'
miRNA:   3'- aCG-GCUCGUA-CGCGga-GCGcGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 81777 0.66 0.540839
Target:  5'- -aCCGGGac-GCGCUcggCGCGCCCGuCGa -3'
miRNA:   3'- acGGCUCguaCGCGGa--GCGCGGGC-GC- -5'
29649 5' -63.6 NC_006151.1 + 71808 0.66 0.540839
Target:  5'- gGCCGAGCucgcGCGUggCGCuGCCCaGCu -3'
miRNA:   3'- aCGGCUCGua--CGCGgaGCG-CGGG-CGc -5'
29649 5' -63.6 NC_006151.1 + 66007 0.66 0.540839
Target:  5'- -uCCGcGGCGUcgaGCGCCUCcgcaaagucCGCCCGCGu -3'
miRNA:   3'- acGGC-UCGUA---CGCGGAGc--------GCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 59116 0.66 0.540839
Target:  5'- aGCaGGGCGUacaGCuGCCggugggugGCGCCCGCGg -3'
miRNA:   3'- aCGgCUCGUA---CG-CGGag------CGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 49116 0.66 0.540839
Target:  5'- gGuCCGGGCGacguacccgacGCuGCC-CGCGCCCGCc -3'
miRNA:   3'- aC-GGCUCGUa----------CG-CGGaGCGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 4139 0.66 0.540839
Target:  5'- gGCCGGGCcgGCcCCggggaUCGCG-UCGCGg -3'
miRNA:   3'- aCGGCUCGuaCGcGG-----AGCGCgGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.