Results 81 - 100 of 389 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29649 | 5' | -63.6 | NC_006151.1 | + | 49116 | 0.66 | 0.540839 |
Target: 5'- gGuCCGGGCGacguacccgacGCuGCC-CGCGCCCGCc -3' miRNA: 3'- aC-GGCUCGUa----------CG-CGGaGCGCGGGCGc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 4139 | 0.66 | 0.540839 |
Target: 5'- gGCCGGGCcgGCcCCggggaUCGCG-UCGCGg -3' miRNA: 3'- aCGGCUCGuaCGcGG-----AGCGCgGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 85130 | 0.66 | 0.540839 |
Target: 5'- cGCUGuGCcUGCaCCUgGUGCaCCGCGu -3' miRNA: 3'- aCGGCuCGuACGcGGAgCGCG-GGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 95207 | 0.66 | 0.535131 |
Target: 5'- aUGCCcagcGAGCGgcUGCGCCgCacgcccucgaccgagGCGCCCGuCGg -3' miRNA: 3'- -ACGG----CUCGU--ACGCGGaG---------------CGCGGGC-GC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 124459 | 0.66 | 0.531337 |
Target: 5'- cGUCGAGguggaccUGCGCCccUCGCGCCugaaCGCGc -3' miRNA: 3'- aCGGCUCgu-----ACGCGG--AGCGCGG----GCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 54952 | 0.66 | 0.531337 |
Target: 5'- cUGCgCGAGCAcgcGCGCCUC-UGCCaGCu -3' miRNA: 3'- -ACG-GCUCGUa--CGCGGAGcGCGGgCGc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 34599 | 0.66 | 0.531337 |
Target: 5'- cGCCcucgGAGCGcGCGCCgagCGCGaggCGCGg -3' miRNA: 3'- aCGG----CUCGUaCGCGGa--GCGCgg-GCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 81777 | 0.66 | 0.540839 |
Target: 5'- -aCCGGGac-GCGCUcggCGCGCCCGuCGa -3' miRNA: 3'- acGGCUCguaCGCGGa--GCGCGGGC-GC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 130523 | 0.66 | 0.540839 |
Target: 5'- gGCgCGGGCGUcGCGUacaCGCcCCCGCGc -3' miRNA: 3'- aCG-GCUCGUA-CGCGga-GCGcGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 133403 | 0.66 | 0.540839 |
Target: 5'- gGCCGAGCggGCgGUCUUG-GC-CGCGg -3' miRNA: 3'- aCGGCUCGuaCG-CGGAGCgCGgGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 4022 | 0.66 | 0.550397 |
Target: 5'- gGCCGcGGCGUagguccagGCgGCCUCGCGggCGCGg -3' miRNA: 3'- aCGGC-UCGUA--------CG-CGGAGCGCggGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 135101 | 0.66 | 0.550397 |
Target: 5'- gGCCGGGCggGCGgCgguaGCGCgCGgGg -3' miRNA: 3'- aCGGCUCGuaCGCgGag--CGCGgGCgC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 131842 | 0.66 | 0.550397 |
Target: 5'- gUGauGAGCGggGCgGCCgagacgCGCGCCgGCGg -3' miRNA: 3'- -ACggCUCGUa-CG-CGGa-----GCGCGGgCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 89137 | 0.66 | 0.550397 |
Target: 5'- gGaCCGGGg--GCGUCgagacCGCGCCCGCc -3' miRNA: 3'- aC-GGCUCguaCGCGGa----GCGCGGGCGc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 83237 | 0.66 | 0.550397 |
Target: 5'- aGCgCG-GCGcGCGCCcccagucgUCGCGCCaGCGg -3' miRNA: 3'- aCG-GCuCGUaCGCGG--------AGCGCGGgCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 70645 | 0.66 | 0.550397 |
Target: 5'- gGCCGcGCGcgagGCGCCcguccucaCGCGCgCCGCc -3' miRNA: 3'- aCGGCuCGUa---CGCGGa-------GCGCG-GGCGc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 58673 | 0.66 | 0.550397 |
Target: 5'- gGCCGc-CAUgaccGCGCCgugCGCGCCgCGCc -3' miRNA: 3'- aCGGCucGUA----CGCGGa--GCGCGG-GCGc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 13181 | 0.66 | 0.550397 |
Target: 5'- cGCCGcGGC---CGUCUCgGgGCCCGCGg -3' miRNA: 3'- aCGGC-UCGuacGCGGAG-CgCGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 17470 | 0.66 | 0.549439 |
Target: 5'- uUGCCGcGGCGUGU-CCUCgucggcgGCGCgCCGCu -3' miRNA: 3'- -ACGGC-UCGUACGcGGAG-------CGCG-GGCGc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 56057 | 0.66 | 0.544656 |
Target: 5'- cGCUGAcGC-UGCGCCUCgagagcggcgagacgGUGuCCUGCGa -3' miRNA: 3'- aCGGCU-CGuACGCGGAG---------------CGC-GGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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