Results 1 - 20 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2965 | 3' | -58.5 | NC_001493.1 | + | 22916 | 0.72 | 0.444712 |
Target: 5'- uCGA--AGCCGGGUCgUACCCCgUGGAaCCu -3' miRNA: 3'- -GCUccUCGGCCUAG-AUGGGG-ACCU-GG- -5' |
|||||||
2965 | 3' | -58.5 | NC_001493.1 | + | 50372 | 0.66 | 0.809899 |
Target: 5'- gCGGGGAGuCCGGGaugaUACCg--GGACCc -3' miRNA: 3'- -GCUCCUC-GGCCUag--AUGGggaCCUGG- -5' |
|||||||
2965 | 3' | -58.5 | NC_001493.1 | + | 124669 | 0.66 | 0.792365 |
Target: 5'- -cGGGAGCCgcgGGGUC-AUCCCcGcGACCg -3' miRNA: 3'- gcUCCUCGG---CCUAGaUGGGGaC-CUGG- -5' |
|||||||
2965 | 3' | -58.5 | NC_001493.1 | + | 9114 | 0.66 | 0.792365 |
Target: 5'- -cGGGAGCCgcgGGGUC-AUCCCcGcGACCg -3' miRNA: 3'- gcUCCUCGG---CCUAGaUGGGGaC-CUGG- -5' |
|||||||
2965 | 3' | -58.5 | NC_001493.1 | + | 95387 | 0.67 | 0.774275 |
Target: 5'- cCGGGcGAGCCGuGGaaucguUCaUGCUCCgGGACCc -3' miRNA: 3'- -GCUC-CUCGGC-CU------AG-AUGGGGaCCUGG- -5' |
|||||||
2965 | 3' | -58.5 | NC_001493.1 | + | 108803 | 0.67 | 0.774275 |
Target: 5'- gGAGGuGCCGGG------CCUGGACCc -3' miRNA: 3'- gCUCCuCGGCCUagauggGGACCUGG- -5' |
|||||||
2965 | 3' | -58.5 | NC_001493.1 | + | 103585 | 0.67 | 0.755695 |
Target: 5'- uGGGGGGUCGGAacgcgccggugaUCccACCCgagUGGACCu -3' miRNA: 3'- gCUCCUCGGCCU------------AGa-UGGGg--ACCUGG- -5' |
|||||||
2965 | 3' | -58.5 | NC_001493.1 | + | 81245 | 0.67 | 0.746244 |
Target: 5'- uCGAGGAGgucgUGGGUCUGCUCgUguaacaGGGCCg -3' miRNA: 3'- -GCUCCUCg---GCCUAGAUGGGgA------CCUGG- -5' |
|||||||
2965 | 3' | -58.5 | NC_001493.1 | + | 113324 | 0.68 | 0.711483 |
Target: 5'- aCGGGGAucguGCCGGGUCUGCgcgucgagucgagugUCCguccGGACUc -3' miRNA: 3'- -GCUCCU----CGGCCUAGAUG---------------GGGa---CCUGG- -5' |
|||||||
2965 | 3' | -58.5 | NC_001493.1 | + | 45792 | 0.68 | 0.697715 |
Target: 5'- -cGGGAGCUGGAgUCcaugcagACCgCaCUGGACCu -3' miRNA: 3'- gcUCCUCGGCCU-AGa------UGG-G-GACCUGG- -5' |
|||||||
2965 | 3' | -58.5 | NC_001493.1 | + | 118249 | 0.68 | 0.686823 |
Target: 5'- uGAGGGGUgGGAgggccguUCU-CCCaaGGACCu -3' miRNA: 3'- gCUCCUCGgCCU-------AGAuGGGgaCCUGG- -5' |
|||||||
2965 | 3' | -58.5 | NC_001493.1 | + | 2695 | 0.68 | 0.686823 |
Target: 5'- uGAGGGGUgGGAgggccguUCU-CCCaaGGACCu -3' miRNA: 3'- gCUCCUCGgCCU-------AGAuGGGgaCCUGG- -5' |
|||||||
2965 | 3' | -58.5 | NC_001493.1 | + | 73517 | 0.69 | 0.607703 |
Target: 5'- -cGGGAGCCuccuGGAUCUACUCUUcaaGGACg -3' miRNA: 3'- gcUCCUCGG----CCUAGAUGGGGA---CCUGg -5' |
|||||||
2965 | 3' | -58.5 | NC_001493.1 | + | 23454 | 0.72 | 0.481157 |
Target: 5'- uCGAGGcGCC-GAUCaACaCCUGGACCa -3' miRNA: 3'- -GCUCCuCGGcCUAGaUGgGGACCUGG- -5' |
|||||||
2965 | 3' | -58.5 | NC_001493.1 | + | 44198 | 0.76 | 0.263237 |
Target: 5'- aGAGGGGCCGGGUauuucggGCCCUgggGGAgCCg -3' miRNA: 3'- gCUCCUCGGCCUAga-----UGGGGa--CCU-GG- -5' |
|||||||
2965 | 3' | -58.5 | NC_001493.1 | + | 87869 | 1.04 | 0.003759 |
Target: 5'- aCGAGGAGCCGGAUCUACCCCcGGACCu -3' miRNA: 3'- -GCUCCUCGGCCUAGAUGGGGaCCUGG- -5' |
|||||||
2965 | 3' | -58.5 | NC_001493.1 | + | 87923 | 1.04 | 0.003759 |
Target: 5'- aCGAGGAGCCGGAUCUACCCCcGGACCu -3' miRNA: 3'- -GCUCCUCGGCCUAGAUGGGGaCCUGG- -5' |
|||||||
2965 | 3' | -58.5 | NC_001493.1 | + | 87965 | 1.05 | 0.003371 |
Target: 5'- aCGAGGAGCCGGAUCUACCCCgGGACCu -3' miRNA: 3'- -GCUCCUCGGCCUAGAUGGGGaCCUGG- -5' |
|||||||
2965 | 3' | -58.5 | NC_001493.1 | + | 88007 | 1.08 | 0.002008 |
Target: 5'- aCGAGGAGCUGGAUCUACCCCUGGACCu -3' miRNA: 3'- -GCUCCUCGGCCUAGAUGGGGACCUGG- -5' |
|||||||
2965 | 3' | -58.5 | NC_001493.1 | + | 46762 | 0.66 | 0.801206 |
Target: 5'- uCGAGGAagacccuguguaGCUGGcgCagggugauCUCCUGGACCc -3' miRNA: 3'- -GCUCCU------------CGGCCuaGau------GGGGACCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home