Results 21 - 28 of 28 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 2965 | 3' | -58.5 | NC_001493.1 | + | 23454 | 0.72 | 0.481157 |
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Target: 5'- uCGAGGcGCC-GAUCaACaCCUGGACCa -3' miRNA: 3'- -GCUCCuCGGcCUAGaUGgGGACCUGG- -5' |
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| 2965 | 3' | -58.5 | NC_001493.1 | + | 22916 | 0.72 | 0.444712 |
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Target: 5'- uCGA--AGCCGGGUCgUACCCCgUGGAaCCu -3' miRNA: 3'- -GCUccUCGGCCUAG-AUGGGG-ACCU-GG- -5' |
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| 2965 | 3' | -58.5 | NC_001493.1 | + | 44198 | 0.76 | 0.263237 |
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Target: 5'- aGAGGGGCCGGGUauuucggGCCCUgggGGAgCCg -3' miRNA: 3'- gCUCCUCGGCCUAga-----UGGGGa--CCU-GG- -5' |
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| 2965 | 3' | -58.5 | NC_001493.1 | + | 87869 | 1.04 | 0.003759 |
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Target: 5'- aCGAGGAGCCGGAUCUACCCCcGGACCu -3' miRNA: 3'- -GCUCCUCGGCCUAGAUGGGGaCCUGG- -5' |
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| 2965 | 3' | -58.5 | NC_001493.1 | + | 87923 | 1.04 | 0.003759 |
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Target: 5'- aCGAGGAGCCGGAUCUACCCCcGGACCu -3' miRNA: 3'- -GCUCCUCGGCCUAGAUGGGGaCCUGG- -5' |
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| 2965 | 3' | -58.5 | NC_001493.1 | + | 87965 | 1.05 | 0.003371 |
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Target: 5'- aCGAGGAGCCGGAUCUACCCCgGGACCu -3' miRNA: 3'- -GCUCCUCGGCCUAGAUGGGGaCCUGG- -5' |
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| 2965 | 3' | -58.5 | NC_001493.1 | + | 88007 | 1.08 | 0.002008 |
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Target: 5'- aCGAGGAGCUGGAUCUACCCCUGGACCu -3' miRNA: 3'- -GCUCCUCGGCCUAGAUGGGGACCUGG- -5' |
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| 2965 | 3' | -58.5 | NC_001493.1 | + | 88049 | 1.12 | 0.001102 |
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Target: 5'- aCGAGGAGCCGGAUCUACCCCUGGACCu -3' miRNA: 3'- -GCUCCUCGGCCUAGAUGGGGACCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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