miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29650 3' -52.8 NC_006151.1 + 39543 0.66 0.968855
Target:  5'- uCGCCCGcguGGAGGCCUccuUCGcccgCCUGCAc- -3'
miRNA:   3'- -GUGGGU---CUUCUGGA---AGUa---GGACGUcu -5'
29650 3' -52.8 NC_006151.1 + 49044 0.66 0.965633
Target:  5'- gGCCCAcGGgcuGGCCUUCAgcgUCCggcGCGGGg -3'
miRNA:   3'- gUGGGU-CUu--CUGGAAGU---AGGa--CGUCU- -5'
29650 3' -52.8 NC_006151.1 + 131476 0.66 0.962183
Target:  5'- uCGCCCAcGAG-Ca--CGUCCUGCAGGu -3'
miRNA:   3'- -GUGGGUcUUCuGgaaGUAGGACGUCU- -5'
29650 3' -52.8 NC_006151.1 + 1843 0.67 0.954576
Target:  5'- gGCCgAGggGACCgaggCcgCCgccGCGGAc -3'
miRNA:   3'- gUGGgUCuuCUGGaa--GuaGGa--CGUCU- -5'
29650 3' -52.8 NC_006151.1 + 135654 0.67 0.95041
Target:  5'- cCGCCCAGcauGAUCcgCGUCCUGUAc- -3'
miRNA:   3'- -GUGGGUCuu-CUGGaaGUAGGACGUcu -5'
29650 3' -52.8 NC_006151.1 + 136270 0.67 0.95041
Target:  5'- cCACCCgcGGccGGCCUaCGaCCUGCGGGc -3'
miRNA:   3'- -GUGGG--UCuuCUGGAaGUaGGACGUCU- -5'
29650 3' -52.8 NC_006151.1 + 94177 0.67 0.95041
Target:  5'- uGCCCAGGuuGACgUugacgaggUCGUCCgcgGCGGAg -3'
miRNA:   3'- gUGGGUCUu-CUGgA--------AGUAGGa--CGUCU- -5'
29650 3' -52.8 NC_006151.1 + 41744 0.67 0.936416
Target:  5'- gAUCCGuGggGACCggcgUCAcgUCCgGCGGAa -3'
miRNA:   3'- gUGGGU-CuuCUGGa---AGU--AGGaCGUCU- -5'
29650 3' -52.8 NC_006151.1 + 100559 0.67 0.936416
Target:  5'- cCGCCCucacGGCCggCcgCCUGCAGGc -3'
miRNA:   3'- -GUGGGucuuCUGGaaGuaGGACGUCU- -5'
29650 3' -52.8 NC_006151.1 + 3048 0.68 0.920132
Target:  5'- gGCCCAGgcGugCga-GUCCggcgUGCAGAg -3'
miRNA:   3'- gUGGGUCuuCugGaagUAGG----ACGUCU- -5'
29650 3' -52.8 NC_006151.1 + 21207 0.68 0.913584
Target:  5'- cCGCCCAGGAGGcgauaccCCUUCGcCCcccucagGCGGAa -3'
miRNA:   3'- -GUGGGUCUUCU-------GGAAGUaGGa------CGUCU- -5'
29650 3' -52.8 NC_006151.1 + 133010 0.68 0.901553
Target:  5'- cCGCCCGGggGugCUcUCGUCCa--GGAc -3'
miRNA:   3'- -GUGGGUCuuCugGA-AGUAGGacgUCU- -5'
29650 3' -52.8 NC_006151.1 + 71748 0.69 0.880733
Target:  5'- aCACgCAGAAGcGCCgcgcgUgGUCCUGCGGc -3'
miRNA:   3'- -GUGgGUCUUC-UGGa----AgUAGGACGUCu -5'
29650 3' -52.8 NC_006151.1 + 132644 0.74 0.655432
Target:  5'- gCGCCCGGAccuGGGCCgccaccUCGUCC-GCGGAg -3'
miRNA:   3'- -GUGGGUCU---UCUGGa-----AGUAGGaCGUCU- -5'
29650 3' -52.8 NC_006151.1 + 37802 1.09 0.004739
Target:  5'- gCACCCAGAAGACCUUCAUCCUGCAGAg -3'
miRNA:   3'- -GUGGGUCUUCUGGAAGUAGGACGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.