miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29671 3' -56.9 NC_006261.1 + 1212 0.66 0.080406
Target:  5'- -uUCCCGAacuuuuucugAGCCC--AGCCGagaaagacggaGCCGGCg -3'
miRNA:   3'- ucGGGGCU----------UCGGGuuUCGGU-----------UGGUCG- -5'
29671 3' -56.9 NC_006261.1 + 1385 0.66 0.072392
Target:  5'- aGGUCgUGGAGUccgCCAAGGCCAuucUCGGCg -3'
miRNA:   3'- -UCGGgGCUUCG---GGUUUCGGUu--GGUCG- -5'
29671 3' -56.9 NC_006261.1 + 3512 0.67 0.065148
Target:  5'- cAGCCaaGGugGGCCUAAuacaauGGCCAAUCAGg -3'
miRNA:   3'- -UCGGggCU--UCGGGUU------UCGGUUGGUCg -5'
29671 3' -56.9 NC_006261.1 + 3398 0.67 0.058606
Target:  5'- cGCCCac-AG-CCAGAGCUugGACCGGCu -3'
miRNA:   3'- uCGGGgcuUCgGGUUUCGG--UUGGUCG- -5'
29671 3' -56.9 NC_006261.1 + 458 0.68 0.052702
Target:  5'- gGGCCuCCGggGCCUuacucacgcGgcGCCAuuggACCAGg -3'
miRNA:   3'- -UCGG-GGCuuCGGG---------UuuCGGU----UGGUCg -5'
29671 3' -56.9 NC_006261.1 + 3530 0.7 0.033157
Target:  5'- aGGCCCaccuuggcUGAAGCCCAGAGUCugcguauuuGCCGuGCc -3'
miRNA:   3'- -UCGGG--------GCUUCGGGUUUCGGu--------UGGU-CG- -5'
29671 3' -56.9 NC_006261.1 + 941 0.72 0.020781
Target:  5'- uGCCCCG--GUCCAccAGCCAcccgACCAGCu -3'
miRNA:   3'- uCGGGGCuuCGGGUu-UCGGU----UGGUCG- -5'
29671 3' -56.9 NC_006261.1 + 2330 0.78 0.007016
Target:  5'- cGGCCCUcGAGCacgaCAAGGCCuacGACCAGCa -3'
miRNA:   3'- -UCGGGGcUUCGg---GUUUCGG---UUGGUCG- -5'
29671 3' -56.9 NC_006261.1 + 2201 1.12 0.000005
Target:  5'- gAGCCCCGAAGCCCAAAGCCAACCAGCa -3'
miRNA:   3'- -UCGGGGCUUCGGGUUUCGGUUGGUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.