Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2968 | 3' | -59.9 | NC_001493.1 | + | 2878 | 0.67 | 0.684288 |
Target: 5'- cCACGGCgGCCaGAGUgGGcAGagUCUUCGa -3' miRNA: 3'- -GUGCCGgUGG-CUCGgCC-UCa-AGGAGC- -5' |
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2968 | 3' | -59.9 | NC_001493.1 | + | 3031 | 0.66 | 0.713696 |
Target: 5'- gACGGCCGCgGGGauGGca-UCCUCGa -3' miRNA: 3'- gUGCCGGUGgCUCggCCucaAGGAGC- -5' |
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2968 | 3' | -59.9 | NC_001493.1 | + | 4278 | 0.66 | 0.751941 |
Target: 5'- -cCGGUC-CCGA---GGAGUUCCUCGa -3' miRNA: 3'- guGCCGGuGGCUcggCCUCAAGGAGC- -5' |
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2968 | 3' | -59.9 | NC_001493.1 | + | 5154 | 0.69 | 0.564061 |
Target: 5'- -cCGGUCACCGgggccgagcgugcAGCCGGuGgacUUCCUCGu -3' miRNA: 3'- guGCCGGUGGC-------------UCGGCCuC---AAGGAGC- -5' |
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2968 | 3' | -59.9 | NC_001493.1 | + | 8021 | 0.73 | 0.337111 |
Target: 5'- uCGgGGCCACCGGGCgGGAGgggaUCGa -3' miRNA: 3'- -GUgCCGGUGGCUCGgCCUCaaggAGC- -5' |
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2968 | 3' | -59.9 | NC_001493.1 | + | 10851 | 0.7 | 0.468976 |
Target: 5'- cCAUGGCCGCCgucauauuagagcGAGCCGccGAGUUUgUCGc -3' miRNA: 3'- -GUGCCGGUGG-------------CUCGGC--CUCAAGgAGC- -5' |
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2968 | 3' | -59.9 | NC_001493.1 | + | 11300 | 0.67 | 0.694143 |
Target: 5'- gGgGGUCAUCGAGCCcuggucccgGGAGc-CCUCGg -3' miRNA: 3'- gUgCCGGUGGCUCGG---------CCUCaaGGAGC- -5' |
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2968 | 3' | -59.9 | NC_001493.1 | + | 18147 | 0.67 | 0.684288 |
Target: 5'- aCGCGGCCccgaaacugAUCGAGUgGGAGgu-CUCGg -3' miRNA: 3'- -GUGCCGG---------UGGCUCGgCCUCaagGAGC- -5' |
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2968 | 3' | -59.9 | NC_001493.1 | + | 18407 | 0.67 | 0.664463 |
Target: 5'- cCACGGCCACggggcgagcccUGAGgaacccuucCCGGAGgacCCUCGc -3' miRNA: 3'- -GUGCCGGUG-----------GCUC---------GGCCUCaa-GGAGC- -5' |
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2968 | 3' | -59.9 | NC_001493.1 | + | 28734 | 0.68 | 0.63456 |
Target: 5'- gCACGGCCGCUgGAGCgCGGGaUggaCUCGa -3' miRNA: 3'- -GUGCCGGUGG-CUCG-GCCUcAag-GAGC- -5' |
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2968 | 3' | -59.9 | NC_001493.1 | + | 28883 | 0.69 | 0.57489 |
Target: 5'- gACGGCCACCGAaacGCuugccuuugugCGGGGaagCCUCa -3' miRNA: 3'- gUGCCGGUGGCU---CG-----------GCCUCaa-GGAGc -5' |
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2968 | 3' | -59.9 | NC_001493.1 | + | 41927 | 0.68 | 0.614602 |
Target: 5'- cCAUGGUCacgACCGAGCCGGGcgagUCCaCGg -3' miRNA: 3'- -GUGCCGG---UGGCUCGGCCUca--AGGaGC- -5' |
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2968 | 3' | -59.9 | NC_001493.1 | + | 49178 | 0.7 | 0.469888 |
Target: 5'- gACGGCCGCCaugcGCCGcuccAGUUCCUCc -3' miRNA: 3'- gUGCCGGUGGcu--CGGCc---UCAAGGAGc -5' |
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2968 | 3' | -59.9 | NC_001493.1 | + | 62576 | 0.67 | 0.644539 |
Target: 5'- cCACGGCCA-CGGGCaCGGGGggcgaggUCCa-- -3' miRNA: 3'- -GUGCCGGUgGCUCG-GCCUCa------AGGagc -5' |
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2968 | 3' | -59.9 | NC_001493.1 | + | 68597 | 0.66 | 0.713696 |
Target: 5'- aCAcCGGUgGCCGGGCCGGAcuauggGUUCaaCGu -3' miRNA: 3'- -GU-GCCGgUGGCUCGGCCU------CAAGgaGC- -5' |
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2968 | 3' | -59.9 | NC_001493.1 | + | 88234 | 0.66 | 0.736805 |
Target: 5'- aGCGGCCACCGAucaacagaucguuccGCaCGGugg-CCUCc -3' miRNA: 3'- gUGCCGGUGGCU---------------CG-GCCucaaGGAGc -5' |
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2968 | 3' | -59.9 | NC_001493.1 | + | 88996 | 1.08 | 0.00134 |
Target: 5'- cCACGGCCACCGAGCCGGAGUUCCUCGa -3' miRNA: 3'- -GUGCCGGUGGCUCGGCCUCAAGGAGC- -5' |
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2968 | 3' | -59.9 | NC_001493.1 | + | 90833 | 0.72 | 0.375553 |
Target: 5'- aACGGCCucucgacuCgGAGCCGGcGggCCUCGa -3' miRNA: 3'- gUGCCGGu-------GgCUCGGCCuCaaGGAGC- -5' |
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2968 | 3' | -59.9 | NC_001493.1 | + | 96008 | 0.7 | 0.488323 |
Target: 5'- gGCGGUCGCgGGcGCCGuGAGacucUUCCUCGu -3' miRNA: 3'- gUGCCGGUGgCU-CGGC-CUC----AAGGAGC- -5' |
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2968 | 3' | -59.9 | NC_001493.1 | + | 100241 | 0.66 | 0.720481 |
Target: 5'- aCACGGCCAaugcuucauCCGGGCUGuugugaaucgaaauGAGccCCUCGg -3' miRNA: 3'- -GUGCCGGU---------GGCUCGGC--------------CUCaaGGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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