miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2971 3' -51.7 NC_001493.1 + 18800 0.65 0.984353
Target:  5'- gGUGAGacucGGGUCgcucGAcgcggccgucguacUCGGGGCCCGUUc -3'
miRNA:   3'- aUACUU----UCUAGa---CU--------------AGCUCCGGGCGG- -5'
2971 3' -51.7 NC_001493.1 + 27960 0.66 0.982987
Target:  5'- cGUGGu-GAUC-GAUCGGGGCaCGCg -3'
miRNA:   3'- aUACUuuCUAGaCUAGCUCCGgGCGg -5'
2971 3' -51.7 NC_001493.1 + 75139 0.66 0.980882
Target:  5'- --cGAGGGaAUCgGGUCGGugcuGGCCCagGCCa -3'
miRNA:   3'- auaCUUUC-UAGaCUAGCU----CCGGG--CGG- -5'
2971 3' -51.7 NC_001493.1 + 11329 0.66 0.978589
Target:  5'- aGUGGu-GGUCUGGUCaGAucGUCCGCCu -3'
miRNA:   3'- aUACUuuCUAGACUAG-CUc-CGGGCGG- -5'
2971 3' -51.7 NC_001493.1 + 126883 0.66 0.978589
Target:  5'- aGUGGu-GGUCUGGUCaGAucGUCCGCCu -3'
miRNA:   3'- aUACUuuCUAGACUAG-CUc-CGGGCGG- -5'
2971 3' -51.7 NC_001493.1 + 71614 0.66 0.976098
Target:  5'- gGUGGAGGAguaUCUGAU-GAGGCUCa-- -3'
miRNA:   3'- aUACUUUCU---AGACUAgCUCCGGGcgg -5'
2971 3' -51.7 NC_001493.1 + 113332 0.66 0.976098
Target:  5'- cGUGccGGGUCUGcgcgucgaGUCGAGuGUCCGUCc -3'
miRNA:   3'- aUACuuUCUAGAC--------UAGCUC-CGGGCGG- -5'
2971 3' -51.7 NC_001493.1 + 18086 0.66 0.973402
Target:  5'- cGUGAAAGGUCuUGAUCuuGaGCaCgGCCa -3'
miRNA:   3'- aUACUUUCUAG-ACUAGcuC-CG-GgCGG- -5'
2971 3' -51.7 NC_001493.1 + 133641 0.66 0.973402
Target:  5'- cGUGAAAGGUCuUGAUCuuGaGCaCgGCCa -3'
miRNA:   3'- aUACUUUCUAG-ACUAGcuC-CG-GgCGG- -5'
2971 3' -51.7 NC_001493.1 + 45143 0.66 0.973402
Target:  5'- ------cGAUagUGAUCGAcGGCCCGCa -3'
miRNA:   3'- auacuuuCUAg-ACUAGCU-CCGGGCGg -5'
2971 3' -51.7 NC_001493.1 + 20692 0.67 0.970492
Target:  5'- --cGAggcuAGGAUgcggcccaUGAUCGAGGCCCggggGCCu -3'
miRNA:   3'- auaCU----UUCUAg-------ACUAGCUCCGGG----CGG- -5'
2971 3' -51.7 NC_001493.1 + 98422 0.67 0.970491
Target:  5'- ---cGAGGGUCUGAUUGAGcacGUCCGUg -3'
miRNA:   3'- auacUUUCUAGACUAGCUC---CGGGCGg -5'
2971 3' -51.7 NC_001493.1 + 82107 0.67 0.964
Target:  5'- gAUGAGGGAUCgcggugggaUGAggcUCGAGGUCUuCCa -3'
miRNA:   3'- aUACUUUCUAG---------ACU---AGCUCCGGGcGG- -5'
2971 3' -51.7 NC_001493.1 + 15491 0.67 0.964
Target:  5'- -uUGguGGAUCggugaaugGAgaccCGGGGcCCCGCCg -3'
miRNA:   3'- auACuuUCUAGa-------CUa---GCUCC-GGGCGG- -5'
2971 3' -51.7 NC_001493.1 + 38006 0.68 0.943104
Target:  5'- gAUGggGGcgaUGAUCGGGGCCguguacgCGUCg -3'
miRNA:   3'- aUACuuUCuagACUAGCUCCGG-------GCGG- -5'
2971 3' -51.7 NC_001493.1 + 10572 0.68 0.938736
Target:  5'- ----cGGGAUCUGGUCGAGaCCCGg- -3'
miRNA:   3'- auacuUUCUAGACUAGCUCcGGGCgg -5'
2971 3' -51.7 NC_001493.1 + 126126 0.68 0.938736
Target:  5'- ----cGGGAUCUGGUCGAGaCCCGg- -3'
miRNA:   3'- auacuUUCUAGACUAGCUCcGGGCgg -5'
2971 3' -51.7 NC_001493.1 + 90818 0.69 0.928277
Target:  5'- --cGGGAGGUCUGcUCGAacGGCCUcucgacucggaGCCg -3'
miRNA:   3'- auaCUUUCUAGACuAGCU--CCGGG-----------CGG- -5'
2971 3' -51.7 NC_001493.1 + 72650 0.69 0.922658
Target:  5'- gUGUGGGuAGAUCacGGUCGucGCCaCGCCa -3'
miRNA:   3'- -AUACUU-UCUAGa-CUAGCucCGG-GCGG- -5'
2971 3' -51.7 NC_001493.1 + 133680 0.69 0.916778
Target:  5'- aGUGGGAGGUC---UCGGGGaCCCGUg -3'
miRNA:   3'- aUACUUUCUAGacuAGCUCC-GGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.