miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2971 5' -56.3 NC_001493.1 + 27609 0.66 0.894939
Target:  5'- cUCGAGGGGacCCGcgCGGGCucgggaucGGCC-CCg -3'
miRNA:   3'- -AGCUCUCC--GGCaaGCUCGu-------CUGGaGG- -5'
2971 5' -56.3 NC_001493.1 + 95102 0.66 0.894939
Target:  5'- aCGcacauGGGGCUGga-GAGCAGAUCUUg -3'
miRNA:   3'- aGCu----CUCCGGCaagCUCGUCUGGAGg -5'
2971 5' -56.3 NC_001493.1 + 122355 0.66 0.888258
Target:  5'- cUCGuGAGGCC-UUCauGGUAGGCC-CCu -3'
miRNA:   3'- -AGCuCUCCGGcAAGc-UCGUCUGGaGG- -5'
2971 5' -56.3 NC_001493.1 + 6801 0.66 0.888258
Target:  5'- cUCGuGAGGCC-UUCauGGUAGGCC-CCu -3'
miRNA:   3'- -AGCuCUCCGGcAAGc-UCGUCUGGaGG- -5'
2971 5' -56.3 NC_001493.1 + 122238 0.66 0.888258
Target:  5'- cUCGuGAGGCC-UUCauGGUAGGCC-CCu -3'
miRNA:   3'- -AGCuCUCCGGcAAGc-UCGUCUGGaGG- -5'
2971 5' -56.3 NC_001493.1 + 6683 0.66 0.888258
Target:  5'- cUCGuGAGGCC-UUCauGGUAGGCC-CCu -3'
miRNA:   3'- -AGCuCUCCGGcAAGc-UCGUCUGGaGG- -5'
2971 5' -56.3 NC_001493.1 + 58710 0.66 0.881352
Target:  5'- -aGAGAGGuuGUgacCGGGUAuucguacgcuguGACCUCa -3'
miRNA:   3'- agCUCUCCggCAa--GCUCGU------------CUGGAGg -5'
2971 5' -56.3 NC_001493.1 + 79870 0.66 0.881352
Target:  5'- gUGAGcaGGGUCGaUCGAGCGaauGAUUUCCu -3'
miRNA:   3'- aGCUC--UCCGGCaAGCUCGU---CUGGAGG- -5'
2971 5' -56.3 NC_001493.1 + 123903 0.66 0.874227
Target:  5'- -gGAGGGGCCGcgCGucucGCccGACCgUCCu -3'
miRNA:   3'- agCUCUCCGGCaaGCu---CGu-CUGG-AGG- -5'
2971 5' -56.3 NC_001493.1 + 8349 0.66 0.874227
Target:  5'- -gGAGGGGCCGcgCGucucGCccGACCgUCCu -3'
miRNA:   3'- agCUCUCCGGCaaGCu---CGu-CUGG-AGG- -5'
2971 5' -56.3 NC_001493.1 + 69740 0.66 0.874226
Target:  5'- aCGAgccGAGGCCG--CG-GCAGAguccccCCUCCa -3'
miRNA:   3'- aGCU---CUCCGGCaaGCuCGUCU------GGAGG- -5'
2971 5' -56.3 NC_001493.1 + 30822 0.67 0.859334
Target:  5'- gUCGAcGGGCCGguggUCGGGgGGAgCaCCa -3'
miRNA:   3'- -AGCUcUCCGGCa---AGCUCgUCUgGaGG- -5'
2971 5' -56.3 NC_001493.1 + 101368 0.67 0.851579
Target:  5'- uUUGGGAGGUCGa-UGGGUAGAUC-CCg -3'
miRNA:   3'- -AGCUCUCCGGCaaGCUCGUCUGGaGG- -5'
2971 5' -56.3 NC_001493.1 + 57773 0.67 0.851579
Target:  5'- aUCGAGGGGgCGUU--GGguGACgUCUa -3'
miRNA:   3'- -AGCUCUCCgGCAAgcUCguCUGgAGG- -5'
2971 5' -56.3 NC_001493.1 + 36402 0.67 0.835481
Target:  5'- cUCGGGgcGGGCCcucuugGUUCGAGgGGG-CUCCu -3'
miRNA:   3'- -AGCUC--UCCGG------CAAGCUCgUCUgGAGG- -5'
2971 5' -56.3 NC_001493.1 + 50694 0.67 0.835481
Target:  5'- aCGAGucgcGGCCGU--GGGUGGACCUUUc -3'
miRNA:   3'- aGCUCu---CCGGCAagCUCGUCUGGAGG- -5'
2971 5' -56.3 NC_001493.1 + 15007 0.67 0.835481
Target:  5'- aUGAuGAcGGCCGU--GAGCAGGuCUUCCa -3'
miRNA:   3'- aGCU-CU-CCGGCAagCUCGUCU-GGAGG- -5'
2971 5' -56.3 NC_001493.1 + 130561 0.67 0.835481
Target:  5'- aUGAuGAcGGCCGU--GAGCAGGuCUUCCa -3'
miRNA:   3'- aGCU-CU-CCGGCAagCUCGUCU-GGAGG- -5'
2971 5' -56.3 NC_001493.1 + 101077 0.67 0.827153
Target:  5'- aUCGAGcaucccGGGUgUGUcuaUCGAGCGGGCC-CCg -3'
miRNA:   3'- -AGCUC------UCCG-GCA---AGCUCGUCUGGaGG- -5'
2971 5' -56.3 NC_001493.1 + 127880 0.68 0.801143
Target:  5'- aCGAG-GGC---UCGAGCGGGCUUCg -3'
miRNA:   3'- aGCUCuCCGgcaAGCUCGUCUGGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.