Results 41 - 60 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29719 | 3' | -63 | NC_006273.1 | + | 152038 | 0.67 | 0.679647 |
Target: 5'- uGGGCGCgCGCGACGCCgaaCUGUaCCaCCu -3' miRNA: 3'- gCUCGCGgGCGUUGUGG---GGCA-GG-GGc -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 226988 | 0.67 | 0.660947 |
Target: 5'- uGGGUGCCCGUcacgcaGGCGCUggCGUUCCCGu -3' miRNA: 3'- gCUCGCGGGCG------UUGUGGg-GCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 133104 | 0.67 | 0.660947 |
Target: 5'- -cGGCGCCCaCAGCACgCUGguaCCCGg -3' miRNA: 3'- gcUCGCGGGcGUUGUGgGGCag-GGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 161941 | 0.67 | 0.648747 |
Target: 5'- gCGAGUGCcgCCGCAGCcggcagagcgccgaACCCCGUCgCa- -3' miRNA: 3'- -GCUCGCG--GGCGUUG--------------UGGGGCAGgGgc -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 168307 | 0.67 | 0.698214 |
Target: 5'- gGAGgaGCCCGUugaagaaaagaAACACCCgGUgCCCu -3' miRNA: 3'- gCUCg-CGGGCG-----------UUGUGGGgCAgGGGc -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 197170 | 0.67 | 0.67031 |
Target: 5'- gCGucccCGCCgGCGGC-CUCCGUCUCCGu -3' miRNA: 3'- -GCuc--GCGGgCGUUGuGGGGCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 111817 | 0.67 | 0.698214 |
Target: 5'- aGAGCGuucCCCGuCGAaucaGCgUCGUCCCCa -3' miRNA: 3'- gCUCGC---GGGC-GUUg---UGgGGCAGGGGc -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 204957 | 0.67 | 0.674048 |
Target: 5'- cCGcGGUGCCgGCGGCuaugauccugugguCCCCGUCCaCCu -3' miRNA: 3'- -GC-UCGCGGgCGUUGu-------------GGGGCAGG-GGc -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 195173 | 0.67 | 0.651565 |
Target: 5'- --cGCGCCCcCGacACACCCCGaCCgCCGc -3' miRNA: 3'- gcuCGCGGGcGU--UGUGGGGCaGG-GGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 95121 | 0.67 | 0.67031 |
Target: 5'- uCGAGCcggggcgucGCCCGUcccCACCaCCGUCcaCCCGg -3' miRNA: 3'- -GCUCG---------CGGGCGuu-GUGG-GGCAG--GGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 144121 | 0.67 | 0.651565 |
Target: 5'- uCGAGaCGCCCcacaugaugaugGCGGCGCCUCaguauuuUCCCCGc -3' miRNA: 3'- -GCUC-GCGGG------------CGUUGUGGGGc------AGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 128981 | 0.67 | 0.66001 |
Target: 5'- uGAGCGCgCGCAGCACCgUGUgcauagcUUCCa -3' miRNA: 3'- gCUCGCGgGCGUUGUGGgGCA-------GGGGc -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 235366 | 0.67 | 0.651565 |
Target: 5'- --cGCGCCCcCGacACACCCCGaCCgCCGc -3' miRNA: 3'- gcuCGCGGGcGU--UGUGGGGCaGG-GGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 117241 | 0.67 | 0.651565 |
Target: 5'- gGGGCGCgCGUucccuCUUCGUCCCCGu -3' miRNA: 3'- gCUCGCGgGCGuugu-GGGGCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 535 | 0.67 | 0.651565 |
Target: 5'- --cGCGCCCcCGacACACCCCGaCCgCCGc -3' miRNA: 3'- gcuCGCGGGcGU--UGUGGGGCaGG-GGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 152778 | 0.67 | 0.660947 |
Target: 5'- gGAGCGCgCC-CAGCACgCCCGUUUgCa -3' miRNA: 3'- gCUCGCG-GGcGUUGUG-GGGCAGGgGc -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 196226 | 0.67 | 0.698214 |
Target: 5'- gGGGCGCCCgGCGGC-CCgCGggguucuaCCCGg -3' miRNA: 3'- gCUCGCGGG-CGUUGuGGgGCag------GGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 196946 | 0.67 | 0.698214 |
Target: 5'- --cGCGCCCaGCAGCACCaUCGgcugcagucgccUUCCCGg -3' miRNA: 3'- gcuCGCGGG-CGUUGUGG-GGC------------AGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 124507 | 0.67 | 0.692661 |
Target: 5'- --cGCGCCCGCAgacaccaagcaugccACGCgUCGaCCCCa -3' miRNA: 3'- gcuCGCGGGCGU---------------UGUGgGGCaGGGGc -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 142635 | 0.67 | 0.68895 |
Target: 5'- uGAGCGgCUGCGgaacGCGgCCCGggCCCGa -3' miRNA: 3'- gCUCGCgGGCGU----UGUgGGGCagGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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