Results 21 - 40 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29719 | 3' | -63 | NC_006273.1 | + | 235211 | 0.73 | 0.343004 |
Target: 5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3' miRNA: 3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 235256 | 0.73 | 0.343004 |
Target: 5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3' miRNA: 3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 96303 | 0.72 | 0.41065 |
Target: 5'- -cGGUGCCCGCGACucGCCCC-UCCuCCa -3' miRNA: 3'- gcUCGCGGGCGUUG--UGGGGcAGG-GGc -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 1317 | 0.72 | 0.379573 |
Target: 5'- --cGUcCCCGCAcACcCCCCGUCCCCGc -3' miRNA: 3'- gcuCGcGGGCGU-UGuGGGGCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 194391 | 0.72 | 0.379573 |
Target: 5'- --cGUcCCCGCAcACcCCCCGUCCCCGc -3' miRNA: 3'- gcuCGcGGGCGU-UGuGGGGCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 38597 | 0.72 | 0.402733 |
Target: 5'- aGAGCGCCUGCGGCugUgCCGccacauggaCCCCGa -3' miRNA: 3'- gCUCGCGGGCGUUGugG-GGCa--------GGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 116593 | 0.72 | 0.387194 |
Target: 5'- cCGAGCgaacgaugaugGCCCGCGACGaagagaaccCCgCCGUCCCgCGg -3' miRNA: 3'- -GCUCG-----------CGGGCGUUGU---------GG-GGCAGGG-GC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 35669 | 0.71 | 0.451637 |
Target: 5'- aGAGC-CCCaGCAcguACACCuuGUCCUCGc -3' miRNA: 3'- gCUCGcGGG-CGU---UGUGGggCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 213527 | 0.71 | 0.42677 |
Target: 5'- gGGGCcgcgGCCCGCAGCAgCCaaaGUCCCa- -3' miRNA: 3'- gCUCG----CGGGCGUUGUgGGg--CAGGGgc -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 1395 | 0.71 | 0.460102 |
Target: 5'- --cGUcCCCGCcGCAagagucCCCCGUCCCCGg -3' miRNA: 3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 214072 | 0.71 | 0.451637 |
Target: 5'- --cGUGCCCGuCGGCugCCUGUUCCUGc -3' miRNA: 3'- gcuCGCGGGC-GUUGugGGGCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 210141 | 0.71 | 0.443259 |
Target: 5'- aCGcGGCGCCCGCGACGugguuucaccauUCCCGUCUgUGu -3' miRNA: 3'- -GC-UCGCGGGCGUUGU------------GGGGCAGGgGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 94642 | 0.71 | 0.42677 |
Target: 5'- --cGCGCCCGguGCccgGCCCaCGgCCCCGg -3' miRNA: 3'- gcuCGCGGGCguUG---UGGG-GCaGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 194313 | 0.71 | 0.460102 |
Target: 5'- --cGUcCCCGCcGCAagagucCCCCGUCCCCGg -3' miRNA: 3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 76728 | 0.71 | 0.443259 |
Target: 5'- aGuGCGCCgGCAACAUCCgCGUCaCCa -3' miRNA: 3'- gCuCGCGGgCGUUGUGGG-GCAGgGGc -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 843 | 0.7 | 0.518819 |
Target: 5'- gGAGCGCuuGCGgcGCcauaaaggcgcuuaGCCCUGUCCCg- -3' miRNA: 3'- gCUCGCGggCGU--UG--------------UGGGGCAGGGgc -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 22495 | 0.7 | 0.503616 |
Target: 5'- -cGGCGCCCGUcaucuGACACUCCGUuuUCCUGc -3' miRNA: 3'- gcUCGCGGGCG-----UUGUGGGGCA--GGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 194865 | 0.7 | 0.518819 |
Target: 5'- gGAGCGCuuGCGgcGCcauaaaggcgcuuaGCCCUGUCCCg- -3' miRNA: 3'- gCUCGCGggCGU--UG--------------UGGGGCAGGGgc -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 120872 | 0.69 | 0.585869 |
Target: 5'- ---aCGCCCGCcguGCACgCCGUCgCCGa -3' miRNA: 3'- gcucGCGGGCGu--UGUGgGGCAGgGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 194212 | 0.69 | 0.567268 |
Target: 5'- --nGUcCCCGCcGCAagagucCCCCGUCCCCGc -3' miRNA: 3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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