Results 41 - 60 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29719 | 3' | -63 | NC_006273.1 | + | 235301 | 0.69 | 0.548822 |
Target: 5'- ---aCGCCCGCGACACaCCCGcggcacaCCCUGa -3' miRNA: 3'- gcucGCGGGCGUUGUG-GGGCa------GGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 195238 | 0.69 | 0.548822 |
Target: 5'- ---aCGCCCGCGACACaCCCGcggcacaCCCUGa -3' miRNA: 3'- gcucGCGGGCGUUGUG-GGGCa------GGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 185410 | 0.69 | 0.548822 |
Target: 5'- uGAGCuGCCCGCGACuCCUCGaauauucuUCCUCu -3' miRNA: 3'- gCUCG-CGGGCGUUGuGGGGC--------AGGGGc -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 203867 | 0.69 | 0.558024 |
Target: 5'- gGGGcCGUCUGC-ACGCCCCGgagugCCUCGu -3' miRNA: 3'- gCUC-GCGGGCGuUGUGGGGCa----GGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 34557 | 0.69 | 0.558024 |
Target: 5'- --uGCGCCUGgaCGGCACCCUGUgCCUGu -3' miRNA: 3'- gcuCGCGGGC--GUUGUGGGGCAgGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 194212 | 0.69 | 0.567268 |
Target: 5'- --nGUcCCCGCcGCAagagucCCCCGUCCCCGc -3' miRNA: 3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 141140 | 0.69 | 0.567268 |
Target: 5'- aCGAG-GCCgGCcaggcgGGCACCUCGcgCCCCGa -3' miRNA: 3'- -GCUCgCGGgCG------UUGUGGGGCa-GGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 1496 | 0.69 | 0.567268 |
Target: 5'- --nGUcCCCGCcGCAagagucCCCCGUCCCCGc -3' miRNA: 3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 94186 | 0.69 | 0.576552 |
Target: 5'- gCGGGUccugGCCCGCGcaugcGCACCggGUCCCCu -3' miRNA: 3'- -GCUCG----CGGGCGU-----UGUGGggCAGGGGc -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 216216 | 0.69 | 0.579344 |
Target: 5'- gCGAGCaaaagccaugcacGCCCGCgGACAcacgcugaaacagguCCCCaUCCCCGa -3' miRNA: 3'- -GCUCG-------------CGGGCG-UUGU---------------GGGGcAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 120872 | 0.69 | 0.585869 |
Target: 5'- ---aCGCCCGCcguGCACgCCGUCgCCGa -3' miRNA: 3'- gcucGCGGGCGu--UGUGgGGCAGgGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 40889 | 0.68 | 0.595214 |
Target: 5'- aGAGUGCCC------CCCCGUCUCCGg -3' miRNA: 3'- gCUCGCGGGcguuguGGGGCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 89713 | 0.68 | 0.595214 |
Target: 5'- -uAGCGCCCaGCAugcgaccgccGCGCCCCaucauucCCCCGg -3' miRNA: 3'- gcUCGCGGG-CGU----------UGUGGGGca-----GGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 45640 | 0.68 | 0.595214 |
Target: 5'- aCGAGCGCcaCCGCGAacuguGCCaCGUCCUCa -3' miRNA: 3'- -GCUCGCG--GGCGUUg----UGGgGCAGGGGc -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 143081 | 0.68 | 0.595214 |
Target: 5'- uGAGCagaCCGCGguGCACgCCCGUgCCCa -3' miRNA: 3'- gCUCGcg-GGCGU--UGUG-GGGCAgGGGc -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 74455 | 0.68 | 0.604583 |
Target: 5'- gCGAGCGCCCGUca-AgCUCGUCUcgCCGg -3' miRNA: 3'- -GCUCGCGGGCGuugUgGGGCAGG--GGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 95090 | 0.68 | 0.604583 |
Target: 5'- uGGGCGuuggccgguCCCGUGACGCuCCCcUCCCCc -3' miRNA: 3'- gCUCGC---------GGGCGUUGUG-GGGcAGGGGc -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 78531 | 0.68 | 0.613029 |
Target: 5'- cCGGGCGCCgucaggaCGUAAaagaCCCGaUCCCCGa -3' miRNA: 3'- -GCUCGCGG-------GCGUUgug-GGGC-AGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 21824 | 0.68 | 0.613968 |
Target: 5'- aCGAGaggcucaGCCgcugCGCcGCGCCgCCGUCCUCGa -3' miRNA: 3'- -GCUCg------CGG----GCGuUGUGG-GGCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 98802 | 0.68 | 0.613968 |
Target: 5'- gGAGgGCCC-CGACGuCCCC-UCuCCCGg -3' miRNA: 3'- gCUCgCGGGcGUUGU-GGGGcAG-GGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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