miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 3' -63 NC_006273.1 + 28285 0.67 0.679647
Target:  5'- --cGCGCCgcCGCAGCAUCCCGcauagCCUCu -3'
miRNA:   3'- gcuCGCGG--GCGUUGUGGGGCa----GGGGc -5'
29719 3' -63 NC_006273.1 + 33423 0.67 0.679647
Target:  5'- uCGGGCGUCgGCGGCGCgCgacagCCCCGg -3'
miRNA:   3'- -GCUCGCGGgCGUUGUGgGgca--GGGGC- -5'
29719 3' -63 NC_006273.1 + 67947 0.67 0.679647
Target:  5'- aCGcAGCagGCCCuGCAACACgCCGUCCaUCa -3'
miRNA:   3'- -GC-UCG--CGGG-CGUUGUGgGGCAGG-GGc -5'
29719 3' -63 NC_006273.1 + 137349 0.67 0.679647
Target:  5'- -aAGUGCgCGCGGCGCgUUGUCCUCGc -3'
miRNA:   3'- gcUCGCGgGCGUUGUGgGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 204957 0.67 0.674048
Target:  5'- cCGcGGUGCCgGCGGCuaugauccugugguCCCCGUCCaCCu -3'
miRNA:   3'- -GC-UCGCGGgCGUUGu-------------GGGGCAGG-GGc -5'
29719 3' -63 NC_006273.1 + 197170 0.67 0.67031
Target:  5'- gCGucccCGCCgGCGGC-CUCCGUCUCCGu -3'
miRNA:   3'- -GCuc--GCGGgCGUUGuGGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 233369 0.67 0.67031
Target:  5'- gCGucccCGCCgGCGGC-CUCCGUCUCCGu -3'
miRNA:   3'- -GCuc--GCGGgCGUUGuGGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 95121 0.67 0.67031
Target:  5'- uCGAGCcggggcgucGCCCGUcccCACCaCCGUCcaCCCGg -3'
miRNA:   3'- -GCUCG---------CGGGCGuu-GUGG-GGCAG--GGGC- -5'
29719 3' -63 NC_006273.1 + 221394 0.67 0.667504
Target:  5'- --cGCGCCCGCcccAguuuauacucuccgACGCCCCGUCCa-- -3'
miRNA:   3'- gcuCGCGGGCG---U--------------UGUGGGGCAGGggc -5'
29719 3' -63 NC_006273.1 + 226988 0.67 0.660947
Target:  5'- uGGGUGCCCGUcacgcaGGCGCUggCGUUCCCGu -3'
miRNA:   3'- gCUCGCGGGCG------UUGUGGg-GCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 152778 0.67 0.660947
Target:  5'- gGAGCGCgCC-CAGCACgCCCGUUUgCa -3'
miRNA:   3'- gCUCGCG-GGcGUUGUG-GGGCAGGgGc -5'
29719 3' -63 NC_006273.1 + 133104 0.67 0.660947
Target:  5'- -cGGCGCCCaCAGCACgCUGguaCCCGg -3'
miRNA:   3'- gcUCGCGGGcGUUGUGgGGCag-GGGC- -5'
29719 3' -63 NC_006273.1 + 128981 0.67 0.66001
Target:  5'- uGAGCGCgCGCAGCACCgUGUgcauagcUUCCa -3'
miRNA:   3'- gCUCGCGgGCGUUGUGGgGCA-------GGGGc -5'
29719 3' -63 NC_006273.1 + 144121 0.67 0.651565
Target:  5'- uCGAGaCGCCCcacaugaugaugGCGGCGCCUCaguauuuUCCCCGc -3'
miRNA:   3'- -GCUC-GCGGG------------CGUUGUGGGGc------AGGGGC- -5'
29719 3' -63 NC_006273.1 + 195173 0.67 0.651565
Target:  5'- --cGCGCCCcCGacACACCCCGaCCgCCGc -3'
miRNA:   3'- gcuCGCGGGcGU--UGUGGGGCaGG-GGC- -5'
29719 3' -63 NC_006273.1 + 105703 0.67 0.651565
Target:  5'- uGuAGCGCCgacgGUGAgACCCgCGUCCCUGg -3'
miRNA:   3'- gC-UCGCGGg---CGUUgUGGG-GCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 535 0.67 0.651565
Target:  5'- --cGCGCCCcCGacACACCCCGaCCgCCGc -3'
miRNA:   3'- gcuCGCGGGcGU--UGUGGGGCaGG-GGC- -5'
29719 3' -63 NC_006273.1 + 235366 0.67 0.651565
Target:  5'- --cGCGCCCcCGacACACCCCGaCCgCCGc -3'
miRNA:   3'- gcuCGCGGGcGU--UGUGGGGCaGG-GGC- -5'
29719 3' -63 NC_006273.1 + 117241 0.67 0.651565
Target:  5'- gGGGCGCgCGUucccuCUUCGUCCCCGu -3'
miRNA:   3'- gCUCGCGgGCGuugu-GGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 161941 0.67 0.648747
Target:  5'- gCGAGUGCcgCCGCAGCcggcagagcgccgaACCCCGUCgCa- -3'
miRNA:   3'- -GCUCGCG--GGCGUUG--------------UGGGGCAGgGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.