miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 3' -63 NC_006273.1 + 380 0.73 0.343004
Target:  5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3'
miRNA:   3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5'
29719 3' -63 NC_006273.1 + 425 0.73 0.343004
Target:  5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3'
miRNA:   3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5'
29719 3' -63 NC_006273.1 + 470 0.69 0.548822
Target:  5'- ---aCGCCCGCGACACaCCCGcggcacaCCCUGa -3'
miRNA:   3'- gcucGCGGGCGUUGUG-GGGCa------GGGGC- -5'
29719 3' -63 NC_006273.1 + 535 0.67 0.651565
Target:  5'- --cGCGCCCcCGacACACCCCGaCCgCCGc -3'
miRNA:   3'- gcuCGCGGGcGU--UGUGGGGCaGG-GGC- -5'
29719 3' -63 NC_006273.1 + 843 0.7 0.518819
Target:  5'- gGAGCGCuuGCGgcGCcauaaaggcgcuuaGCCCUGUCCCg- -3'
miRNA:   3'- gCUCGCGggCGU--UG--------------UGGGGCAGGGgc -5'
29719 3' -63 NC_006273.1 + 1100 1.09 0.001369
Target:  5'- cCGAGCGCCCGCAACACCCCGUCCCCGg -3'
miRNA:   3'- -GCUCGCGGGCGUUGUGGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 1212 0.66 0.74369
Target:  5'- -cGGCGCCCaGCAcgcccgaaaacaACGCCgucgCCG-CCCCGa -3'
miRNA:   3'- gcUCGCGGG-CGU------------UGUGG----GGCaGGGGC- -5'
29719 3' -63 NC_006273.1 + 1283 0.74 0.315625
Target:  5'- --cGUcCCCGCAcACcCCCCGUCCCCGg -3'
miRNA:   3'- gcuCGcGGGCGU-UGuGGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 1317 0.72 0.379573
Target:  5'- --cGUcCCCGCAcACcCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGcGGGCGU-UGuGGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 1352 0.84 0.067781
Target:  5'- --cGCcauCCCGCGACGCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGc--GGGCGUUGUGGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 1395 0.71 0.460102
Target:  5'- --cGUcCCCGCcGCAagagucCCCCGUCCCCGg -3'
miRNA:   3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 1453 0.78 0.177263
Target:  5'- --cGCcauCCCGCAACuCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGc--GGGCGUUGuGGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 1496 0.69 0.567268
Target:  5'- --nGUcCCCGCcGCAagagucCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 1524 0.74 0.322312
Target:  5'- --cGUGUCCGCcGCGaaaggcCCCCGUCCCCGu -3'
miRNA:   3'- gcuCGCGGGCGuUGU------GGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 1676 0.76 0.227768
Target:  5'- aGGGCGCagCGCucgGCuACCCCGUCCCCc -3'
miRNA:   3'- gCUCGCGg-GCGu--UG-UGGGGCAGGGGc -5'
29719 3' -63 NC_006273.1 + 7786 0.66 0.74369
Target:  5'- gGAGCGCCCgGCuuuuauggAACACUCgCGUCCg-- -3'
miRNA:   3'- gCUCGCGGG-CG--------UUGUGGG-GCAGGggc -5'
29719 3' -63 NC_006273.1 + 20332 0.66 0.752567
Target:  5'- gCGGGCGUCUGaGACAUCCCGcgggaagcggUCCCa- -3'
miRNA:   3'- -GCUCGCGGGCgUUGUGGGGC----------AGGGgc -5'
29719 3' -63 NC_006273.1 + 21824 0.68 0.613968
Target:  5'- aCGAGaggcucaGCCgcugCGCcGCGCCgCCGUCCUCGa -3'
miRNA:   3'- -GCUCg------CGG----GCGuUGUGG-GGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 22495 0.7 0.503616
Target:  5'- -cGGCGCCCGUcaucuGACACUCCGUuuUCCUGc -3'
miRNA:   3'- gcUCGCGGGCG-----UUGUGGGGCA--GGGGC- -5'
29719 3' -63 NC_006273.1 + 28285 0.67 0.679647
Target:  5'- --cGCGCCgcCGCAGCAUCCCGcauagCCUCu -3'
miRNA:   3'- gcuCGCGG--GCGUUGUGGGGCa----GGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.