miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 3' -63 NC_006273.1 + 30177 0.68 0.632767
Target:  5'- cCGGGgGCCCGUcgcacaccACGCUCCGUCUUCu -3'
miRNA:   3'- -GCUCgCGGGCGu-------UGUGGGGCAGGGGc -5'
29719 3' -63 NC_006273.1 + 33423 0.67 0.679647
Target:  5'- uCGGGCGUCgGCGGCGCgCgacagCCCCGg -3'
miRNA:   3'- -GCUCGCGGgCGUUGUGgGgca--GGGGC- -5'
29719 3' -63 NC_006273.1 + 34557 0.69 0.558024
Target:  5'- --uGCGCCUGgaCGGCACCCUGUgCCUGu -3'
miRNA:   3'- gcuCGCGGGC--GUUGUGGGGCAgGGGC- -5'
29719 3' -63 NC_006273.1 + 35669 0.71 0.451637
Target:  5'- aGAGC-CCCaGCAcguACACCuuGUCCUCGc -3'
miRNA:   3'- gCUCGcGGG-CGU---UGUGGggCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 37372 0.77 0.189958
Target:  5'- -cGGCGaCCCGCucCACCCCGUCCuCCa -3'
miRNA:   3'- gcUCGC-GGGCGuuGUGGGGCAGG-GGc -5'
29719 3' -63 NC_006273.1 + 38075 0.66 0.74369
Target:  5'- uCGAGCGUCa-CGGCACgCCGUCuugaacgcagggCCCGg -3'
miRNA:   3'- -GCUCGCGGgcGUUGUGgGGCAG------------GGGC- -5'
29719 3' -63 NC_006273.1 + 38450 0.69 0.539668
Target:  5'- uGAGCGgCCGCGGCGCgggCUCGgcgUCCCGc -3'
miRNA:   3'- gCUCGCgGGCGUUGUG---GGGCa--GGGGC- -5'
29719 3' -63 NC_006273.1 + 38597 0.72 0.402733
Target:  5'- aGAGCGCCUGCGGCugUgCCGccacauggaCCCCGa -3'
miRNA:   3'- gCUCGCGGGCGUUGugG-GGCa--------GGGGC- -5'
29719 3' -63 NC_006273.1 + 40889 0.68 0.595214
Target:  5'- aGAGUGCCC------CCCCGUCUCCGg -3'
miRNA:   3'- gCUCGCGGGcguuguGGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 43032 0.66 0.72479
Target:  5'- gCGAcGCGCCacggccgCGCAacGCACCUCGaacUCCUCGa -3'
miRNA:   3'- -GCU-CGCGG-------GCGU--UGUGGGGC---AGGGGC- -5'
29719 3' -63 NC_006273.1 + 45640 0.68 0.595214
Target:  5'- aCGAGCGCcaCCGCGAacuguGCCaCGUCCUCa -3'
miRNA:   3'- -GCUCGCG--GGCGUUg----UGGgGCAGGGGc -5'
29719 3' -63 NC_006273.1 + 45993 0.8 0.136961
Target:  5'- aGaAGC-CCCGCAACGCCCguCGUCCCCGc -3'
miRNA:   3'- gC-UCGcGGGCGUUGUGGG--GCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 46411 0.76 0.243513
Target:  5'- gCGAGCcccaucggGCCCGCcACugCCCGuucUCCCCGu -3'
miRNA:   3'- -GCUCG--------CGGGCGuUGugGGGC---AGGGGC- -5'
29719 3' -63 NC_006273.1 + 51894 0.66 0.72479
Target:  5'- aCGGGUGCuguCCGCGcCGCCgagccugCCGUCgCCCGu -3'
miRNA:   3'- -GCUCGCG---GGCGUuGUGG-------GGCAG-GGGC- -5'
29719 3' -63 NC_006273.1 + 61494 0.66 0.716594
Target:  5'- --uGgGCCCGCAucugcuGCACCgCCG-CCUCGa -3'
miRNA:   3'- gcuCgCGGGCGU------UGUGG-GGCaGGGGC- -5'
29719 3' -63 NC_006273.1 + 64516 0.66 0.734731
Target:  5'- uCGGcCGCcgCCGCAACGCCC-GUgCCCGc -3'
miRNA:   3'- -GCUcGCG--GGCGUUGUGGGgCAgGGGC- -5'
29719 3' -63 NC_006273.1 + 67947 0.67 0.679647
Target:  5'- aCGcAGCagGCCCuGCAACACgCCGUCCaUCa -3'
miRNA:   3'- -GC-UCG--CGGG-CGUUGUGgGGCAGG-GGc -5'
29719 3' -63 NC_006273.1 + 72359 0.66 0.716594
Target:  5'- uGAuGCGCCUGCuguccGGCGCCCgCGUgUCCu -3'
miRNA:   3'- gCU-CGCGGGCG-----UUGUGGG-GCAgGGGc -5'
29719 3' -63 NC_006273.1 + 74455 0.68 0.604583
Target:  5'- gCGAGCGCCCGUca-AgCUCGUCUcgCCGg -3'
miRNA:   3'- -GCUCGCGGGCGuugUgGGGCAGG--GGC- -5'
29719 3' -63 NC_006273.1 + 76728 0.71 0.443259
Target:  5'- aGuGCGCCgGCAACAUCCgCGUCaCCa -3'
miRNA:   3'- gCuCGCGGgCGUUGUGGG-GCAGgGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.