miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 3' -63 NC_006273.1 + 78531 0.68 0.613029
Target:  5'- cCGGGCGCCgucaggaCGUAAaagaCCCGaUCCCCGa -3'
miRNA:   3'- -GCUCGCGG-------GCGUUgug-GGGC-AGGGGC- -5'
29719 3' -63 NC_006273.1 + 85112 0.66 0.752567
Target:  5'- aCGAGCuCCCGCAcguGCAUCCaCaUCUCCu -3'
miRNA:   3'- -GCUCGcGGGCGU---UGUGGG-GcAGGGGc -5'
29719 3' -63 NC_006273.1 + 85948 0.66 0.74369
Target:  5'- gGAGCGCguucCCGCAucCACaaCGUCaCCCGc -3'
miRNA:   3'- gCUCGCG----GGCGUu-GUGggGCAG-GGGC- -5'
29719 3' -63 NC_006273.1 + 87545 0.66 0.707431
Target:  5'- gCGAGCgGCCCGCGaguuauuuguGCACCgacuccaUGUCUCUGg -3'
miRNA:   3'- -GCUCG-CGGGCGU----------UGUGGg------GCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 89494 0.68 0.642169
Target:  5'- gCGuGGCGCCCGC--CACCUCGUCgCgGc -3'
miRNA:   3'- -GC-UCGCGGGCGuuGUGGGGCAGgGgC- -5'
29719 3' -63 NC_006273.1 + 89713 0.68 0.595214
Target:  5'- -uAGCGCCCaGCAugcgaccgccGCGCCCCaucauucCCCCGg -3'
miRNA:   3'- gcUCGCGGG-CGU----------UGUGGGGca-----GGGGC- -5'
29719 3' -63 NC_006273.1 + 94104 0.68 0.623365
Target:  5'- uGGGCGgCCGCAccuagggagcGCgaGCCCCGUgCCgGg -3'
miRNA:   3'- gCUCGCgGGCGU----------UG--UGGGGCAgGGgC- -5'
29719 3' -63 NC_006273.1 + 94186 0.69 0.576552
Target:  5'- gCGGGUccugGCCCGCGcaugcGCACCggGUCCCCu -3'
miRNA:   3'- -GCUCG----CGGGCGU-----UGUGGggCAGGGGc -5'
29719 3' -63 NC_006273.1 + 94211 0.66 0.734731
Target:  5'- cCGGcGUGCCCGCcGCcCCCCGgcgcagUCCgCGg -3'
miRNA:   3'- -GCU-CGCGGGCGuUGuGGGGC------AGGgGC- -5'
29719 3' -63 NC_006273.1 + 94520 0.66 0.734731
Target:  5'- gCGGGCGCagcgugcggaCCGCAGCACggCCGgaaCCCUGc -3'
miRNA:   3'- -GCUCGCG----------GGCGUUGUGg-GGCa--GGGGC- -5'
29719 3' -63 NC_006273.1 + 94642 0.71 0.42677
Target:  5'- --cGCGCCCGguGCccgGCCCaCGgCCCCGg -3'
miRNA:   3'- gcuCGCGGGCguUG---UGGG-GCaGGGGC- -5'
29719 3' -63 NC_006273.1 + 95090 0.68 0.604583
Target:  5'- uGGGCGuuggccgguCCCGUGACGCuCCCcUCCCCc -3'
miRNA:   3'- gCUCGC---------GGGCGUUGUG-GGGcAGGGGc -5'
29719 3' -63 NC_006273.1 + 95121 0.67 0.67031
Target:  5'- uCGAGCcggggcgucGCCCGUcccCACCaCCGUCcaCCCGg -3'
miRNA:   3'- -GCUCG---------CGGGCGuu-GUGG-GGCAG--GGGC- -5'
29719 3' -63 NC_006273.1 + 96303 0.72 0.41065
Target:  5'- -cGGUGCCCGCGACucGCCCC-UCCuCCa -3'
miRNA:   3'- gcUCGCGGGCGUUG--UGGGGcAGG-GGc -5'
29719 3' -63 NC_006273.1 + 98802 0.68 0.613968
Target:  5'- gGAGgGCCC-CGACGuCCCC-UCuCCCGg -3'
miRNA:   3'- gCUCgCGGGcGUUGU-GGGGcAG-GGGC- -5'
29719 3' -63 NC_006273.1 + 101474 0.66 0.752567
Target:  5'- gCGAcGCGUggCCGCGucCGCCUCGgugCCCCu -3'
miRNA:   3'- -GCU-CGCG--GGCGUu-GUGGGGCa--GGGGc -5'
29719 3' -63 NC_006273.1 + 104292 0.66 0.725697
Target:  5'- aGAGCGgCCGCGucucgGCCUCGUCCa-- -3'
miRNA:   3'- gCUCGCgGGCGUug---UGGGGCAGGggc -5'
29719 3' -63 NC_006273.1 + 105703 0.67 0.651565
Target:  5'- uGuAGCGCCgacgGUGAgACCCgCGUCCCUGg -3'
miRNA:   3'- gC-UCGCGGg---CGUUgUGGG-GCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 110033 0.66 0.734731
Target:  5'- -cAGCGaCCUGUAcACACCCUGUUCCa- -3'
miRNA:   3'- gcUCGC-GGGCGU-UGUGGGGCAGGGgc -5'
29719 3' -63 NC_006273.1 + 111817 0.67 0.698214
Target:  5'- aGAGCGuucCCCGuCGAaucaGCgUCGUCCCCa -3'
miRNA:   3'- gCUCGC---GGGC-GUUg---UGgGGCAGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.