miRNA display CGI


Results 61 - 80 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 3' -63 NC_006273.1 + 116593 0.72 0.387194
Target:  5'- cCGAGCgaacgaugaugGCCCGCGACGaagagaaccCCgCCGUCCCgCGg -3'
miRNA:   3'- -GCUCG-----------CGGGCGUUGU---------GG-GGCAGGG-GC- -5'
29719 3' -63 NC_006273.1 + 116790 0.66 0.74369
Target:  5'- gGAGCGCgaCCGaCAACGaaggCUGUCCCUGg -3'
miRNA:   3'- gCUCGCG--GGC-GUUGUgg--GGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 117241 0.67 0.651565
Target:  5'- gGGGCGCgCGUucccuCUUCGUCCCCGu -3'
miRNA:   3'- gCUCGCGgGCGuugu-GGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 120872 0.69 0.585869
Target:  5'- ---aCGCCCGCcguGCACgCCGUCgCCGa -3'
miRNA:   3'- gcucGCGGGCGu--UGUGgGGCAGgGGC- -5'
29719 3' -63 NC_006273.1 + 124507 0.67 0.692661
Target:  5'- --cGCGCCCGCAgacaccaagcaugccACGCgUCGaCCCCa -3'
miRNA:   3'- gcuCGCGGGCGU---------------UGUGgGGCaGGGGc -5'
29719 3' -63 NC_006273.1 + 127994 0.67 0.68895
Target:  5'- -cGGCGCgCCGCAcCGCCCauggGUUCCUGc -3'
miRNA:   3'- gcUCGCG-GGCGUuGUGGGg---CAGGGGC- -5'
29719 3' -63 NC_006273.1 + 128981 0.67 0.66001
Target:  5'- uGAGCGCgCGCAGCACCgUGUgcauagcUUCCa -3'
miRNA:   3'- gCUCGCGgGCGUUGUGGgGCA-------GGGGc -5'
29719 3' -63 NC_006273.1 + 130421 0.66 0.752567
Target:  5'- gCGAccGCGCCCGCGucaugaugGCGCUUCGcuUgCCCGa -3'
miRNA:   3'- -GCU--CGCGGGCGU--------UGUGGGGC--AgGGGC- -5'
29719 3' -63 NC_006273.1 + 133104 0.67 0.660947
Target:  5'- -cGGCGCCCaCAGCACgCUGguaCCCGg -3'
miRNA:   3'- gcUCGCGGGcGUUGUGgGGCag-GGGC- -5'
29719 3' -63 NC_006273.1 + 137349 0.67 0.679647
Target:  5'- -aAGUGCgCGCGGCGCgUUGUCCUCGc -3'
miRNA:   3'- gcUCGCGgGCGUUGUGgGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 138037 0.66 0.751683
Target:  5'- -cGGCGCCgGCGccugguuGCugCCgCGUCCCg- -3'
miRNA:   3'- gcUCGCGGgCGU-------UGugGG-GCAGGGgc -5'
29719 3' -63 NC_006273.1 + 141140 0.69 0.567268
Target:  5'- aCGAG-GCCgGCcaggcgGGCACCUCGcgCCCCGa -3'
miRNA:   3'- -GCUCgCGGgCG------UUGUGGGGCa-GGGGC- -5'
29719 3' -63 NC_006273.1 + 142216 0.68 0.623365
Target:  5'- -cGGCGUCCGCGguggacgcaaACGCCCguugCGUCCgCCGu -3'
miRNA:   3'- gcUCGCGGGCGU----------UGUGGG----GCAGG-GGC- -5'
29719 3' -63 NC_006273.1 + 142635 0.67 0.68895
Target:  5'- uGAGCGgCUGCGgaacGCGgCCCGggCCCGa -3'
miRNA:   3'- gCUCGCgGGCGU----UGUgGGGCagGGGC- -5'
29719 3' -63 NC_006273.1 + 143081 0.68 0.595214
Target:  5'- uGAGCagaCCGCGguGCACgCCCGUgCCCa -3'
miRNA:   3'- gCUCGcg-GGCGU--UGUG-GGGCAgGGGc -5'
29719 3' -63 NC_006273.1 + 144121 0.67 0.651565
Target:  5'- uCGAGaCGCCCcacaugaugaugGCGGCGCCUCaguauuuUCCCCGc -3'
miRNA:   3'- -GCUC-GCGGG------------CGUUGUGGGGc------AGGGGC- -5'
29719 3' -63 NC_006273.1 + 151984 0.66 0.707431
Target:  5'- aGGcGCGCgaCGCGGCGCCcuuCCGUCCgCUGg -3'
miRNA:   3'- gCU-CGCGg-GCGUUGUGG---GGCAGG-GGC- -5'
29719 3' -63 NC_006273.1 + 152038 0.67 0.679647
Target:  5'- uGGGCGCgCGCGACGCCgaaCUGUaCCaCCu -3'
miRNA:   3'- gCUCGCGgGCGUUGUGG---GGCA-GG-GGc -5'
29719 3' -63 NC_006273.1 + 152778 0.67 0.660947
Target:  5'- gGAGCGCgCC-CAGCACgCCCGUUUgCa -3'
miRNA:   3'- gCUCGCG-GGcGUUGUG-GGGCAGGgGc -5'
29719 3' -63 NC_006273.1 + 153363 0.66 0.74369
Target:  5'- cCGAG-GCCgGCGGCACgCgCGUgCCCUGc -3'
miRNA:   3'- -GCUCgCGGgCGUUGUG-GgGCA-GGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.