Results 81 - 100 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29719 | 3' | -63 | NC_006273.1 | + | 156708 | 0.74 | 0.296196 |
Target: 5'- -cGGUGCCCGCGG-ACCCCGgCCCCu -3' miRNA: 3'- gcUCGCGGGCGUUgUGGGGCaGGGGc -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 161941 | 0.67 | 0.648747 |
Target: 5'- gCGAGUGCcgCCGCAGCcggcagagcgccgaACCCCGUCgCa- -3' miRNA: 3'- -GCUCGCG--GGCGUUG--------------UGGGGCAGgGgc -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 167550 | 0.74 | 0.296196 |
Target: 5'- gGAGUGCCCGUcGCcgcaaACCCCGUCaugCCCGc -3' miRNA: 3'- gCUCGCGGGCGuUG-----UGGGGCAG---GGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 168307 | 0.67 | 0.698214 |
Target: 5'- gGAGgaGCCCGUugaagaaaagaAACACCCgGUgCCCu -3' miRNA: 3'- gCUCg-CGGGCG-----------UUGUGGGgCAgGGGc -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 185410 | 0.69 | 0.548822 |
Target: 5'- uGAGCuGCCCGCGACuCCUCGaauauucuUCCUCu -3' miRNA: 3'- gCUCG-CGGGCGUUGuGGGGC--------AGGGGc -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 188055 | 0.67 | 0.698214 |
Target: 5'- -cAGCGCCgGCGGCGCgggucucguCUCGUCCaCCa -3' miRNA: 3'- gcUCGCGGgCGUUGUG---------GGGCAGG-GGc -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 188675 | 0.66 | 0.717508 |
Target: 5'- uGAGUgacGCCgGCGuaagagaaaccgaccCACCgCGUCCCCGa -3' miRNA: 3'- gCUCG---CGGgCGUu--------------GUGGgGCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 194184 | 0.74 | 0.322312 |
Target: 5'- --cGUGUCCGCcGCGaaaggcCCCCGUCCCCGu -3' miRNA: 3'- gcuCGCGGGCGuUGU------GGGGCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 194212 | 0.69 | 0.567268 |
Target: 5'- --nGUcCCCGCcGCAagagucCCCCGUCCCCGc -3' miRNA: 3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 194255 | 0.78 | 0.177263 |
Target: 5'- --cGCcauCCCGCAACuCCCCGUCCCCGc -3' miRNA: 3'- gcuCGc--GGGCGUUGuGGGGCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 194313 | 0.71 | 0.460102 |
Target: 5'- --cGUcCCCGCcGCAagagucCCCCGUCCCCGg -3' miRNA: 3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 194356 | 0.84 | 0.067781 |
Target: 5'- --cGCcauCCCGCGACGCCCCGUCCCCGc -3' miRNA: 3'- gcuCGc--GGGCGUUGUGGGGCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 194391 | 0.72 | 0.379573 |
Target: 5'- --cGUcCCCGCAcACcCCCCGUCCCCGc -3' miRNA: 3'- gcuCGcGGGCGU-UGuGGGGCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 194425 | 0.74 | 0.315625 |
Target: 5'- --cGUcCCCGCAcACcCCCCGUCCCCGg -3' miRNA: 3'- gcuCGcGGGCGU-UGuGGGGCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 194496 | 0.66 | 0.74369 |
Target: 5'- -cGGCGCCCaGCAcgcccgaaaacaACGCCgucgCCG-CCCCGa -3' miRNA: 3'- gcUCGCGGG-CGU------------UGUGG----GGCaGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 194610 | 1.01 | 0.004544 |
Target: 5'- -cAGCGCCCGCAACACCCCGUCCCCGg -3' miRNA: 3'- gcUCGCGGGCGUUGUGGGGCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 194865 | 0.7 | 0.518819 |
Target: 5'- gGAGCGCuuGCGgcGCcauaaaggcgcuuaGCCCUGUCCCg- -3' miRNA: 3'- gCUCGCGggCGU--UG--------------UGGGGCAGGGgc -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 195173 | 0.67 | 0.651565 |
Target: 5'- --cGCGCCCcCGacACACCCCGaCCgCCGc -3' miRNA: 3'- gcuCGCGGGcGU--UGUGGGGCaGG-GGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 195238 | 0.69 | 0.548822 |
Target: 5'- ---aCGCCCGCGACACaCCCGcggcacaCCCUGa -3' miRNA: 3'- gcucGCGGGCGUUGUG-GGGCa------GGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 195283 | 0.73 | 0.343004 |
Target: 5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3' miRNA: 3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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