miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 3' -63 NC_006273.1 + 235366 0.67 0.651565
Target:  5'- --cGCGCCCcCGacACACCCCGaCCgCCGc -3'
miRNA:   3'- gcuCGCGGGcGU--UGUGGGGCaGG-GGC- -5'
29719 3' -63 NC_006273.1 + 235301 0.69 0.548822
Target:  5'- ---aCGCCCGCGACACaCCCGcggcacaCCCUGa -3'
miRNA:   3'- gcucGCGGGCGUUGUG-GGGCa------GGGGC- -5'
29719 3' -63 NC_006273.1 + 235256 0.73 0.343004
Target:  5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3'
miRNA:   3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5'
29719 3' -63 NC_006273.1 + 235211 0.73 0.343004
Target:  5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3'
miRNA:   3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5'
29719 3' -63 NC_006273.1 + 234313 0.67 0.698214
Target:  5'- gGGGCGCCCgGCGGC-CCgCGggguucuaCCCGg -3'
miRNA:   3'- gCUCGCGGG-CGUUGuGGgGCag------GGGC- -5'
29719 3' -63 NC_006273.1 + 233592 0.67 0.698214
Target:  5'- --cGCGCCCaGCAGCACCaUCGgcugcagucgccUUCCCGg -3'
miRNA:   3'- gcuCGCGGG-CGUUGUGG-GGC------------AGGGGC- -5'
29719 3' -63 NC_006273.1 + 233369 0.67 0.67031
Target:  5'- gCGucccCGCCgGCGGC-CUCCGUCUCCGu -3'
miRNA:   3'- -GCuc--GCGGgCGUUGuGGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 228596 0.66 0.706512
Target:  5'- aGAGCGUCCGCcgccagaAGCACgaugCCgGUCCaCCa -3'
miRNA:   3'- gCUCGCGGGCG-------UUGUG----GGgCAGG-GGc -5'
29719 3' -63 NC_006273.1 + 227144 0.66 0.716594
Target:  5'- -cGGCuCUCGUccCACCCCGUCCCgGc -3'
miRNA:   3'- gcUCGcGGGCGuuGUGGGGCAGGGgC- -5'
29719 3' -63 NC_006273.1 + 226988 0.67 0.660947
Target:  5'- uGGGUGCCCGUcacgcaGGCGCUggCGUUCCCGu -3'
miRNA:   3'- gCUCGCGGGCG------UUGUGGg-GCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 222432 0.66 0.761354
Target:  5'- aGAG-GCCCGUAcACGCUCCacgGUCCCa- -3'
miRNA:   3'- gCUCgCGGGCGU-UGUGGGG---CAGGGgc -5'
29719 3' -63 NC_006273.1 + 221394 0.67 0.667504
Target:  5'- --cGCGCCCGCcccAguuuauacucuccgACGCCCCGUCCa-- -3'
miRNA:   3'- gcuCGCGGGCG---U--------------UGUGGGGCAGGggc -5'
29719 3' -63 NC_006273.1 + 216216 0.69 0.579344
Target:  5'- gCGAGCaaaagccaugcacGCCCGCgGACAcacgcugaaacagguCCCCaUCCCCGa -3'
miRNA:   3'- -GCUCG-------------CGGGCG-UUGU---------------GGGGcAGGGGC- -5'
29719 3' -63 NC_006273.1 + 214238 0.66 0.752567
Target:  5'- aGAG-GCUgGCGguauggcugcGCGCCuCCGUCCUCGu -3'
miRNA:   3'- gCUCgCGGgCGU----------UGUGG-GGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 214072 0.71 0.451637
Target:  5'- --cGUGCCCGuCGGCugCCUGUUCCUGc -3'
miRNA:   3'- gcuCGCGGGC-GUUGugGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 213527 0.71 0.42677
Target:  5'- gGGGCcgcgGCCCGCAGCAgCCaaaGUCCCa- -3'
miRNA:   3'- gCUCG----CGGGCGUUGUgGGg--CAGGGgc -5'
29719 3' -63 NC_006273.1 + 213292 0.66 0.752567
Target:  5'- aCGAGUGUggucaaaccgUgGCGGCACCCUGUauccgaCCCGu -3'
miRNA:   3'- -GCUCGCG----------GgCGUUGUGGGGCAg-----GGGC- -5'
29719 3' -63 NC_006273.1 + 210141 0.71 0.443259
Target:  5'- aCGcGGCGCCCGCGACGugguuucaccauUCCCGUCUgUGu -3'
miRNA:   3'- -GC-UCGCGGGCGUUGU------------GGGGCAGGgGC- -5'
29719 3' -63 NC_006273.1 + 204957 0.67 0.674048
Target:  5'- cCGcGGUGCCgGCGGCuaugauccugugguCCCCGUCCaCCu -3'
miRNA:   3'- -GC-UCGCGGgCGUUGu-------------GGGGCAGG-GGc -5'
29719 3' -63 NC_006273.1 + 203867 0.69 0.558024
Target:  5'- gGGGcCGUCUGC-ACGCCCCGgagugCCUCGu -3'
miRNA:   3'- gCUC-GCGGGCGuUGUGGGGCa----GGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.