Results 61 - 80 of 124 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29719 | 3' | -63 | NC_006273.1 | + | 120872 | 0.69 | 0.585869 |
Target: 5'- ---aCGCCCGCcguGCACgCCGUCgCCGa -3' miRNA: 3'- gcucGCGGGCGu--UGUGgGGCAGgGGC- -5' |
|||||||
29719 | 3' | -63 | NC_006273.1 | + | 117241 | 0.67 | 0.651565 |
Target: 5'- gGGGCGCgCGUucccuCUUCGUCCCCGu -3' miRNA: 3'- gCUCGCGgGCGuugu-GGGGCAGGGGC- -5' |
|||||||
29719 | 3' | -63 | NC_006273.1 | + | 116790 | 0.66 | 0.74369 |
Target: 5'- gGAGCGCgaCCGaCAACGaaggCUGUCCCUGg -3' miRNA: 3'- gCUCGCG--GGC-GUUGUgg--GGCAGGGGC- -5' |
|||||||
29719 | 3' | -63 | NC_006273.1 | + | 116593 | 0.72 | 0.387194 |
Target: 5'- cCGAGCgaacgaugaugGCCCGCGACGaagagaaccCCgCCGUCCCgCGg -3' miRNA: 3'- -GCUCG-----------CGGGCGUUGU---------GG-GGCAGGG-GC- -5' |
|||||||
29719 | 3' | -63 | NC_006273.1 | + | 111817 | 0.67 | 0.698214 |
Target: 5'- aGAGCGuucCCCGuCGAaucaGCgUCGUCCCCa -3' miRNA: 3'- gCUCGC---GGGC-GUUg---UGgGGCAGGGGc -5' |
|||||||
29719 | 3' | -63 | NC_006273.1 | + | 110033 | 0.66 | 0.734731 |
Target: 5'- -cAGCGaCCUGUAcACACCCUGUUCCa- -3' miRNA: 3'- gcUCGC-GGGCGU-UGUGGGGCAGGGgc -5' |
|||||||
29719 | 3' | -63 | NC_006273.1 | + | 105703 | 0.67 | 0.651565 |
Target: 5'- uGuAGCGCCgacgGUGAgACCCgCGUCCCUGg -3' miRNA: 3'- gC-UCGCGGg---CGUUgUGGG-GCAGGGGC- -5' |
|||||||
29719 | 3' | -63 | NC_006273.1 | + | 104292 | 0.66 | 0.725697 |
Target: 5'- aGAGCGgCCGCGucucgGCCUCGUCCa-- -3' miRNA: 3'- gCUCGCgGGCGUug---UGGGGCAGGggc -5' |
|||||||
29719 | 3' | -63 | NC_006273.1 | + | 101474 | 0.66 | 0.752567 |
Target: 5'- gCGAcGCGUggCCGCGucCGCCUCGgugCCCCu -3' miRNA: 3'- -GCU-CGCG--GGCGUu-GUGGGGCa--GGGGc -5' |
|||||||
29719 | 3' | -63 | NC_006273.1 | + | 98802 | 0.68 | 0.613968 |
Target: 5'- gGAGgGCCC-CGACGuCCCC-UCuCCCGg -3' miRNA: 3'- gCUCgCGGGcGUUGU-GGGGcAG-GGGC- -5' |
|||||||
29719 | 3' | -63 | NC_006273.1 | + | 96303 | 0.72 | 0.41065 |
Target: 5'- -cGGUGCCCGCGACucGCCCC-UCCuCCa -3' miRNA: 3'- gcUCGCGGGCGUUG--UGGGGcAGG-GGc -5' |
|||||||
29719 | 3' | -63 | NC_006273.1 | + | 95121 | 0.67 | 0.67031 |
Target: 5'- uCGAGCcggggcgucGCCCGUcccCACCaCCGUCcaCCCGg -3' miRNA: 3'- -GCUCG---------CGGGCGuu-GUGG-GGCAG--GGGC- -5' |
|||||||
29719 | 3' | -63 | NC_006273.1 | + | 95090 | 0.68 | 0.604583 |
Target: 5'- uGGGCGuuggccgguCCCGUGACGCuCCCcUCCCCc -3' miRNA: 3'- gCUCGC---------GGGCGUUGUG-GGGcAGGGGc -5' |
|||||||
29719 | 3' | -63 | NC_006273.1 | + | 94642 | 0.71 | 0.42677 |
Target: 5'- --cGCGCCCGguGCccgGCCCaCGgCCCCGg -3' miRNA: 3'- gcuCGCGGGCguUG---UGGG-GCaGGGGC- -5' |
|||||||
29719 | 3' | -63 | NC_006273.1 | + | 94520 | 0.66 | 0.734731 |
Target: 5'- gCGGGCGCagcgugcggaCCGCAGCACggCCGgaaCCCUGc -3' miRNA: 3'- -GCUCGCG----------GGCGUUGUGg-GGCa--GGGGC- -5' |
|||||||
29719 | 3' | -63 | NC_006273.1 | + | 94211 | 0.66 | 0.734731 |
Target: 5'- cCGGcGUGCCCGCcGCcCCCCGgcgcagUCCgCGg -3' miRNA: 3'- -GCU-CGCGGGCGuUGuGGGGC------AGGgGC- -5' |
|||||||
29719 | 3' | -63 | NC_006273.1 | + | 94186 | 0.69 | 0.576552 |
Target: 5'- gCGGGUccugGCCCGCGcaugcGCACCggGUCCCCu -3' miRNA: 3'- -GCUCG----CGGGCGU-----UGUGGggCAGGGGc -5' |
|||||||
29719 | 3' | -63 | NC_006273.1 | + | 94104 | 0.68 | 0.623365 |
Target: 5'- uGGGCGgCCGCAccuagggagcGCgaGCCCCGUgCCgGg -3' miRNA: 3'- gCUCGCgGGCGU----------UG--UGGGGCAgGGgC- -5' |
|||||||
29719 | 3' | -63 | NC_006273.1 | + | 89713 | 0.68 | 0.595214 |
Target: 5'- -uAGCGCCCaGCAugcgaccgccGCGCCCCaucauucCCCCGg -3' miRNA: 3'- gcUCGCGGG-CGU----------UGUGGGGca-----GGGGC- -5' |
|||||||
29719 | 3' | -63 | NC_006273.1 | + | 89494 | 0.68 | 0.642169 |
Target: 5'- gCGuGGCGCCCGC--CACCUCGUCgCgGc -3' miRNA: 3'- -GC-UCGCGGGCGuuGUGGGGCAGgGgC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home