miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 3' -63 NC_006273.1 + 194865 0.7 0.518819
Target:  5'- gGAGCGCuuGCGgcGCcauaaaggcgcuuaGCCCUGUCCCg- -3'
miRNA:   3'- gCUCGCGggCGU--UG--------------UGGGGCAGGGgc -5'
29719 3' -63 NC_006273.1 + 235211 0.73 0.343004
Target:  5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3'
miRNA:   3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5'
29719 3' -63 NC_006273.1 + 235256 0.73 0.343004
Target:  5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3'
miRNA:   3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5'
29719 3' -63 NC_006273.1 + 194391 0.72 0.379573
Target:  5'- --cGUcCCCGCAcACcCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGcGGGCGU-UGuGGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 38597 0.72 0.402733
Target:  5'- aGAGCGCCUGCGGCugUgCCGccacauggaCCCCGa -3'
miRNA:   3'- gCUCGCGGGCGUUGugG-GGCa--------GGGGC- -5'
29719 3' -63 NC_006273.1 + 213527 0.71 0.42677
Target:  5'- gGGGCcgcgGCCCGCAGCAgCCaaaGUCCCa- -3'
miRNA:   3'- gCUCG----CGGGCGUUGUgGGg--CAGGGgc -5'
29719 3' -63 NC_006273.1 + 76728 0.71 0.443259
Target:  5'- aGuGCGCCgGCAACAUCCgCGUCaCCa -3'
miRNA:   3'- gCuCGCGGgCGUUGUGGG-GCAGgGGc -5'
29719 3' -63 NC_006273.1 + 35669 0.71 0.451637
Target:  5'- aGAGC-CCCaGCAcguACACCuuGUCCUCGc -3'
miRNA:   3'- gCUCGcGGG-CGU---UGUGGggCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 194313 0.71 0.460102
Target:  5'- --cGUcCCCGCcGCAagagucCCCCGUCCCCGg -3'
miRNA:   3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 425 0.73 0.343004
Target:  5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3'
miRNA:   3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5'
29719 3' -63 NC_006273.1 + 380 0.73 0.343004
Target:  5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3'
miRNA:   3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5'
29719 3' -63 NC_006273.1 + 194184 0.74 0.322312
Target:  5'- --cGUGUCCGCcGCGaaaggcCCCCGUCCCCGu -3'
miRNA:   3'- gcuCGCGGGCGuUGU------GGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 194356 0.84 0.067781
Target:  5'- --cGCcauCCCGCGACGCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGc--GGGCGUUGUGGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 45993 0.8 0.136961
Target:  5'- aGaAGC-CCCGCAACGCCCguCGUCCCCGc -3'
miRNA:   3'- gC-UCGcGGGCGUUGUGGG--GCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 194255 0.78 0.177263
Target:  5'- --cGCcauCCCGCAACuCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGc--GGGCGUUGuGGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 37372 0.77 0.189958
Target:  5'- -cGGCGaCCCGCucCACCCCGUCCuCCa -3'
miRNA:   3'- gcUCGC-GGGCGuuGUGGGGCAGG-GGc -5'
29719 3' -63 NC_006273.1 + 1676 0.76 0.227768
Target:  5'- aGGGCGCagCGCucgGCuACCCCGUCCCCc -3'
miRNA:   3'- gCUCGCGg-GCGu--UG-UGGGGCAGGGGc -5'
29719 3' -63 NC_006273.1 + 46411 0.76 0.243513
Target:  5'- gCGAGCcccaucggGCCCGCcACugCCCGuucUCCCCGu -3'
miRNA:   3'- -GCUCG--------CGGGCGuUGugGGGC---AGGGGC- -5'
29719 3' -63 NC_006273.1 + 156708 0.74 0.296196
Target:  5'- -cGGUGCCCGCGG-ACCCCGgCCCCu -3'
miRNA:   3'- gcUCGCGGGCGUUgUGGGGCaGGGGc -5'
29719 3' -63 NC_006273.1 + 194425 0.74 0.315625
Target:  5'- --cGUcCCCGCAcACcCCCCGUCCCCGg -3'
miRNA:   3'- gcuCGcGGGCGU-UGuGGGGCAGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.