miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 3' -63 NC_006273.1 + 1100 1.09 0.001369
Target:  5'- cCGAGCGCCCGCAACACCCCGUCCCCGg -3'
miRNA:   3'- -GCUCGCGGGCGUUGUGGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 38450 0.69 0.539668
Target:  5'- uGAGCGgCCGCGGCGCgggCUCGgcgUCCCGc -3'
miRNA:   3'- gCUCGCgGGCGUUGUG---GGGCa--GGGGC- -5'
29719 3' -63 NC_006273.1 + 195238 0.69 0.548822
Target:  5'- ---aCGCCCGCGACACaCCCGcggcacaCCCUGa -3'
miRNA:   3'- gcucGCGGGCGUUGUG-GGGCa------GGGGC- -5'
29719 3' -63 NC_006273.1 + 101474 0.66 0.752567
Target:  5'- gCGAcGCGUggCCGCGucCGCCUCGgugCCCCu -3'
miRNA:   3'- -GCU-CGCG--GGCGUu-GUGGGGCa--GGGGc -5'
29719 3' -63 NC_006273.1 + 1283 0.74 0.315625
Target:  5'- --cGUcCCCGCAcACcCCCCGUCCCCGg -3'
miRNA:   3'- gcuCGcGGGCGU-UGuGGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 1524 0.74 0.322312
Target:  5'- --cGUGUCCGCcGCGaaaggcCCCCGUCCCCGu -3'
miRNA:   3'- gcuCGCGGGCGuUGU------GGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 195283 0.73 0.343004
Target:  5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3'
miRNA:   3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5'
29719 3' -63 NC_006273.1 + 1317 0.72 0.379573
Target:  5'- --cGUcCCCGCAcACcCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGcGGGCGU-UGuGGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 94642 0.71 0.42677
Target:  5'- --cGCGCCCGguGCccgGCCCaCGgCCCCGg -3'
miRNA:   3'- gcuCGCGGGCguUG---UGGG-GCaGGGGC- -5'
29719 3' -63 NC_006273.1 + 843 0.7 0.518819
Target:  5'- gGAGCGCuuGCGgcGCcauaaaggcgcuuaGCCCUGUCCCg- -3'
miRNA:   3'- gCUCGCGggCGU--UG--------------UGGGGCAGGGgc -5'
29719 3' -63 NC_006273.1 + 214072 0.71 0.451637
Target:  5'- --cGUGCCCGuCGGCugCCUGUUCCUGc -3'
miRNA:   3'- gcuCGCGGGC-GUUGugGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 96303 0.72 0.41065
Target:  5'- -cGGUGCCCGCGACucGCCCC-UCCuCCa -3'
miRNA:   3'- gcUCGCGGGCGUUG--UGGGGcAGG-GGc -5'
29719 3' -63 NC_006273.1 + 1352 0.84 0.067781
Target:  5'- --cGCcauCCCGCGACGCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGc--GGGCGUUGUGGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 1395 0.71 0.460102
Target:  5'- --cGUcCCCGCcGCAagagucCCCCGUCCCCGg -3'
miRNA:   3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 1453 0.78 0.177263
Target:  5'- --cGCcauCCCGCAACuCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGc--GGGCGUUGuGGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 116593 0.72 0.387194
Target:  5'- cCGAGCgaacgaugaugGCCCGCGACGaagagaaccCCgCCGUCCCgCGg -3'
miRNA:   3'- -GCUCG-----------CGGGCGUUGU---------GG-GGCAGGG-GC- -5'
29719 3' -63 NC_006273.1 + 22495 0.7 0.503616
Target:  5'- -cGGCGCCCGUcaucuGACACUCCGUuuUCCUGc -3'
miRNA:   3'- gcUCGCGGGCG-----UUGUGGGGCA--GGGGC- -5'
29719 3' -63 NC_006273.1 + 185410 0.69 0.548822
Target:  5'- uGAGCuGCCCGCGACuCCUCGaauauucuUCCUCu -3'
miRNA:   3'- gCUCG-CGGGCGUUGuGGGGC--------AGGGGc -5'
29719 3' -63 NC_006273.1 + 167550 0.74 0.296196
Target:  5'- gGAGUGCCCGUcGCcgcaaACCCCGUCaugCCCGc -3'
miRNA:   3'- gCUCGCGGGCGuUG-----UGGGGCAG---GGGC- -5'
29719 3' -63 NC_006273.1 + 195328 0.73 0.343004
Target:  5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3'
miRNA:   3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.