miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 3' -63 NC_006273.1 + 141140 0.69 0.567268
Target:  5'- aCGAG-GCCgGCcaggcgGGCACCUCGcgCCCCGa -3'
miRNA:   3'- -GCUCgCGGgCG------UUGUGGGGCa-GGGGC- -5'
29719 3' -63 NC_006273.1 + 195238 0.69 0.548822
Target:  5'- ---aCGCCCGCGACACaCCCGcggcacaCCCUGa -3'
miRNA:   3'- gcucGCGGGCGUUGUG-GGGCa------GGGGC- -5'
29719 3' -63 NC_006273.1 + 96303 0.72 0.41065
Target:  5'- -cGGUGCCCGCGACucGCCCC-UCCuCCa -3'
miRNA:   3'- gcUCGCGGGCGUUG--UGGGGcAGG-GGc -5'
29719 3' -63 NC_006273.1 + 167550 0.74 0.296196
Target:  5'- gGAGUGCCCGUcGCcgcaaACCCCGUCaugCCCGc -3'
miRNA:   3'- gCUCGCGGGCGuUG-----UGGGGCAG---GGGC- -5'
29719 3' -63 NC_006273.1 + 144121 0.67 0.651565
Target:  5'- uCGAGaCGCCCcacaugaugaugGCGGCGCCUCaguauuuUCCCCGc -3'
miRNA:   3'- -GCUC-GCGGG------------CGUUGUGGGGc------AGGGGC- -5'
29719 3' -63 NC_006273.1 + 40889 0.68 0.595214
Target:  5'- aGAGUGCCC------CCCCGUCUCCGg -3'
miRNA:   3'- gCUCGCGGGcguuguGGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 38450 0.69 0.539668
Target:  5'- uGAGCGgCCGCGGCGCgggCUCGgcgUCCCGc -3'
miRNA:   3'- gCUCGCgGGCGUUGUG---GGGCa--GGGGC- -5'
29719 3' -63 NC_006273.1 + 1453 0.78 0.177263
Target:  5'- --cGCcauCCCGCAACuCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGc--GGGCGUUGuGGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 143081 0.68 0.595214
Target:  5'- uGAGCagaCCGCGguGCACgCCCGUgCCCa -3'
miRNA:   3'- gCUCGcg-GGCGU--UGUG-GGGCAgGGGc -5'
29719 3' -63 NC_006273.1 + 1352 0.84 0.067781
Target:  5'- --cGCcauCCCGCGACGCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGc--GGGCGUUGUGGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 185410 0.69 0.548822
Target:  5'- uGAGCuGCCCGCGACuCCUCGaauauucuUCCUCu -3'
miRNA:   3'- gCUCG-CGGGCGUUGuGGGGC--------AGGGGc -5'
29719 3' -63 NC_006273.1 + 1496 0.69 0.567268
Target:  5'- --nGUcCCCGCcGCAagagucCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 1395 0.71 0.460102
Target:  5'- --cGUcCCCGCcGCAagagucCCCCGUCCCCGg -3'
miRNA:   3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 94642 0.71 0.42677
Target:  5'- --cGCGCCCGguGCccgGCCCaCGgCCCCGg -3'
miRNA:   3'- gcuCGCGGGCguUG---UGGG-GCaGGGGC- -5'
29719 3' -63 NC_006273.1 + 195283 0.73 0.343004
Target:  5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3'
miRNA:   3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5'
29719 3' -63 NC_006273.1 + 1283 0.74 0.315625
Target:  5'- --cGUcCCCGCAcACcCCCCGUCCCCGg -3'
miRNA:   3'- gcuCGcGGGCGU-UGuGGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 197170 0.67 0.67031
Target:  5'- gCGucccCGCCgGCGGC-CUCCGUCUCCGu -3'
miRNA:   3'- -GCuc--GCGGgCGUUGuGGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 226988 0.67 0.660947
Target:  5'- uGGGUGCCCGUcacgcaGGCGCUggCGUUCCCGu -3'
miRNA:   3'- gCUCGCGGGCG------UUGUGGg-GCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 161941 0.67 0.648747
Target:  5'- gCGAGUGCcgCCGCAGCcggcagagcgccgaACCCCGUCgCa- -3'
miRNA:   3'- -GCUCGCG--GGCGUUG--------------UGGGGCAGgGgc -5'
29719 3' -63 NC_006273.1 + 74455 0.68 0.604583
Target:  5'- gCGAGCGCCCGUca-AgCUCGUCUcgCCGg -3'
miRNA:   3'- -GCUCGCGGGCGuugUgGGGCAGG--GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.