Results 41 - 60 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29719 | 3' | -63 | NC_006273.1 | + | 195173 | 0.67 | 0.651565 |
Target: 5'- --cGCGCCCcCGacACACCCCGaCCgCCGc -3' miRNA: 3'- gcuCGCGGGcGU--UGUGGGGCaGG-GGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 38450 | 0.69 | 0.539668 |
Target: 5'- uGAGCGgCCGCGGCGCgggCUCGgcgUCCCGc -3' miRNA: 3'- gCUCGCgGGCGUUGUG---GGGCa--GGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 1453 | 0.78 | 0.177263 |
Target: 5'- --cGCcauCCCGCAACuCCCCGUCCCCGc -3' miRNA: 3'- gcuCGc--GGGCGUUGuGGGGCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 105703 | 0.67 | 0.651565 |
Target: 5'- uGuAGCGCCgacgGUGAgACCCgCGUCCCUGg -3' miRNA: 3'- gC-UCGCGGg---CGUUgUGGG-GCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 1352 | 0.84 | 0.067781 |
Target: 5'- --cGCcauCCCGCGACGCCCCGUCCCCGc -3' miRNA: 3'- gcuCGc--GGGCGUUGUGGGGCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 64516 | 0.66 | 0.734731 |
Target: 5'- uCGGcCGCcgCCGCAACGCCC-GUgCCCGc -3' miRNA: 3'- -GCUcGCG--GGCGUUGUGGGgCAgGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 1283 | 0.74 | 0.315625 |
Target: 5'- --cGUcCCCGCAcACcCCCCGUCCCCGg -3' miRNA: 3'- gcuCGcGGGCGU-UGuGGGGCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 51894 | 0.66 | 0.72479 |
Target: 5'- aCGGGUGCuguCCGCGcCGCCgagccugCCGUCgCCCGu -3' miRNA: 3'- -GCUCGCG---GGCGUuGUGG-------GGCAG-GGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 87545 | 0.66 | 0.707431 |
Target: 5'- gCGAGCgGCCCGCGaguuauuuguGCACCgacuccaUGUCUCUGg -3' miRNA: 3'- -GCUCG-CGGGCGU----------UGUGGg------GCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 168307 | 0.67 | 0.698214 |
Target: 5'- gGAGgaGCCCGUugaagaaaagaAACACCCgGUgCCCu -3' miRNA: 3'- gCUCg-CGGGCG-----------UUGUGGGgCAgGGGc -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 142635 | 0.67 | 0.68895 |
Target: 5'- uGAGCGgCUGCGgaacGCGgCCCGggCCCGa -3' miRNA: 3'- gCUCGCgGGCGU----UGUgGGGCagGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 197170 | 0.67 | 0.67031 |
Target: 5'- gCGucccCGCCgGCGGC-CUCCGUCUCCGu -3' miRNA: 3'- -GCuc--GCGGgCGUUGuGGGGCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 226988 | 0.67 | 0.660947 |
Target: 5'- uGGGUGCCCGUcacgcaGGCGCUggCGUUCCCGu -3' miRNA: 3'- gCUCGCGGGCG------UUGUGGg-GCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 98802 | 0.68 | 0.613968 |
Target: 5'- gGAGgGCCC-CGACGuCCCC-UCuCCCGg -3' miRNA: 3'- gCUCgCGGGcGUUGU-GGGGcAG-GGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 143081 | 0.68 | 0.595214 |
Target: 5'- uGAGCagaCCGCGguGCACgCCCGUgCCCa -3' miRNA: 3'- gCUCGcg-GGCGU--UGUG-GGGCAgGGGc -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 141140 | 0.69 | 0.567268 |
Target: 5'- aCGAG-GCCgGCcaggcgGGCACCUCGcgCCCCGa -3' miRNA: 3'- -GCUCgCGGgCG------UUGUGGGGCa-GGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 195238 | 0.69 | 0.548822 |
Target: 5'- ---aCGCCCGCGACACaCCCGcggcacaCCCUGa -3' miRNA: 3'- gcucGCGGGCGUUGUG-GGGCa------GGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 1395 | 0.71 | 0.460102 |
Target: 5'- --cGUcCCCGCcGCAagagucCCCCGUCCCCGg -3' miRNA: 3'- gcuCGcGGGCGuUGU------GGGGCAGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 94642 | 0.71 | 0.42677 |
Target: 5'- --cGCGCCCGguGCccgGCCCaCGgCCCCGg -3' miRNA: 3'- gcuCGCGGGCguUG---UGGG-GCaGGGGC- -5' |
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29719 | 3' | -63 | NC_006273.1 | + | 195283 | 0.73 | 0.343004 |
Target: 5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3' miRNA: 3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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