miRNA display CGI


Results 61 - 80 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 3' -63 NC_006273.1 + 216216 0.69 0.579344
Target:  5'- gCGAGCaaaagccaugcacGCCCGCgGACAcacgcugaaacagguCCCCaUCCCCGa -3'
miRNA:   3'- -GCUCG-------------CGGGCG-UUGU---------------GGGGcAGGGGC- -5'
29719 3' -63 NC_006273.1 + 40889 0.68 0.595214
Target:  5'- aGAGUGCCC------CCCCGUCUCCGg -3'
miRNA:   3'- gCUCGCGGGcguuguGGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 45640 0.68 0.595214
Target:  5'- aCGAGCGCcaCCGCGAacuguGCCaCGUCCUCa -3'
miRNA:   3'- -GCUCGCG--GGCGUUg----UGGgGCAGGGGc -5'
29719 3' -63 NC_006273.1 + 95090 0.68 0.604583
Target:  5'- uGGGCGuuggccgguCCCGUGACGCuCCCcUCCCCc -3'
miRNA:   3'- gCUCGC---------GGGCGUUGUG-GGGcAGGGGc -5'
29719 3' -63 NC_006273.1 + 46411 0.76 0.243513
Target:  5'- gCGAGCcccaucggGCCCGCcACugCCCGuucUCCCCGu -3'
miRNA:   3'- -GCUCG--------CGGGCGuUGugGGGC---AGGGGC- -5'
29719 3' -63 NC_006273.1 + 94104 0.68 0.623365
Target:  5'- uGGGCGgCCGCAccuagggagcGCgaGCCCCGUgCCgGg -3'
miRNA:   3'- gCUCGCgGGCGU----------UG--UGGGGCAgGGgC- -5'
29719 3' -63 NC_006273.1 + 85112 0.66 0.752567
Target:  5'- aCGAGCuCCCGCAcguGCAUCCaCaUCUCCu -3'
miRNA:   3'- -GCUCGcGGGCGU---UGUGGG-GcAGGGGc -5'
29719 3' -63 NC_006273.1 + 94211 0.66 0.734731
Target:  5'- cCGGcGUGCCCGCcGCcCCCCGgcgcagUCCgCGg -3'
miRNA:   3'- -GCU-CGCGGGCGuUGuGGGGC------AGGgGC- -5'
29719 3' -63 NC_006273.1 + 78531 0.68 0.613029
Target:  5'- cCGGGCGCCgucaggaCGUAAaagaCCCGaUCCCCGa -3'
miRNA:   3'- -GCUCGCGG-------GCGUUgug-GGGC-AGGGGC- -5'
29719 3' -63 NC_006273.1 + 7786 0.66 0.74369
Target:  5'- gGAGCGCCCgGCuuuuauggAACACUCgCGUCCg-- -3'
miRNA:   3'- gCUCGCGGG-CG--------UUGUGGG-GCAGGggc -5'
29719 3' -63 NC_006273.1 + 142216 0.68 0.623365
Target:  5'- -cGGCGUCCGCGguggacgcaaACGCCCguugCGUCCgCCGu -3'
miRNA:   3'- gcUCGCGGGCGU----------UGUGGG----GCAGG-GGC- -5'
29719 3' -63 NC_006273.1 + 153363 0.66 0.74369
Target:  5'- cCGAG-GCCgGCGGCACgCgCGUgCCCUGc -3'
miRNA:   3'- -GCUCgCGGgCGUUGUG-GgGCA-GGGGC- -5'
29719 3' -63 NC_006273.1 + 194496 0.66 0.74369
Target:  5'- -cGGCGCCCaGCAcgcccgaaaacaACGCCgucgCCG-CCCCGa -3'
miRNA:   3'- gcUCGCGGG-CGU------------UGUGG----GGCaGGGGC- -5'
29719 3' -63 NC_006273.1 + 138037 0.66 0.751683
Target:  5'- -cGGCGCCgGCGccugguuGCugCCgCGUCCCg- -3'
miRNA:   3'- gcUCGCGGgCGU-------UGugGG-GCAGGGgc -5'
29719 3' -63 NC_006273.1 + 20332 0.66 0.752567
Target:  5'- gCGGGCGUCUGaGACAUCCCGcgggaagcggUCCCa- -3'
miRNA:   3'- -GCUCGCGGGCgUUGUGGGGC----------AGGGgc -5'
29719 3' -63 NC_006273.1 + 130421 0.66 0.752567
Target:  5'- gCGAccGCGCCCGCGucaugaugGCGCUUCGcuUgCCCGa -3'
miRNA:   3'- -GCU--CGCGGGCGU--------UGUGGGGC--AgGGGC- -5'
29719 3' -63 NC_006273.1 + 222432 0.66 0.761354
Target:  5'- aGAG-GCCCGUAcACGCUCCacgGUCCCa- -3'
miRNA:   3'- gCUCgCGGGCGU-UGUGGGG---CAGGGgc -5'
29719 3' -63 NC_006273.1 + 38075 0.66 0.74369
Target:  5'- uCGAGCGUCa-CGGCACgCCGUCuugaacgcagggCCCGg -3'
miRNA:   3'- -GCUCGCGGgcGUUGUGgGGCAG------------GGGC- -5'
29719 3' -63 NC_006273.1 + 194391 0.72 0.379573
Target:  5'- --cGUcCCCGCAcACcCCCCGUCCCCGc -3'
miRNA:   3'- gcuCGcGGGCGU-UGuGGGGCAGGGGC- -5'
29719 3' -63 NC_006273.1 + 235256 0.73 0.343004
Target:  5'- ---aCGCCCGCGACACaCCCGgccaacacaCCCCGa -3'
miRNA:   3'- gcucGCGGGCGUUGUG-GGGCa--------GGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.