miRNA display CGI


Results 1 - 20 of 452 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 5' -49.8 NC_006273.1 + 72832 0.66 0.999816
Target:  5'- cCGCGGucgccgcaGCUGCGGGGCcucaucgcaGCCu -3'
miRNA:   3'- -GCGCUuuuuuuugUGGCGCCCUG---------CGG- -5'
29719 5' -49.8 NC_006273.1 + 81754 0.66 0.999812
Target:  5'- gCGCGGAGccGGGCugCGaacgcuGACGCCg -3'
miRNA:   3'- -GCGCUUUuuUUUGugGCgcc---CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 98774 0.66 0.999812
Target:  5'- gGgGGGAAGAGGCACgacgaGCGaGGGCcCCg -3'
miRNA:   3'- gCgCUUUUUUUUGUGg----CGC-CCUGcGG- -5'
29719 5' -49.8 NC_006273.1 + 161973 0.66 0.999812
Target:  5'- gCGCGAGcgc-AACGCuCGUcGGAgGCCg -3'
miRNA:   3'- -GCGCUUuuuuUUGUG-GCGcCCUgCGG- -5'
29719 5' -49.8 NC_006273.1 + 61740 0.66 0.999812
Target:  5'- aCGUGAccgcGAGCGCCGUGcG-CGCCu -3'
miRNA:   3'- -GCGCUuuuuUUUGUGGCGCcCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 104323 0.66 0.999812
Target:  5'- gGCGAu---GAGCGCCGagaggGGGAUggGCUg -3'
miRNA:   3'- gCGCUuuuuUUUGUGGCg----CCCUG--CGG- -5'
29719 5' -49.8 NC_006273.1 + 178434 0.66 0.999812
Target:  5'- gGCGggGaucuGAGAACcUCGuCGGGAaccgcUGCCa -3'
miRNA:   3'- gCGCuuU----UUUUUGuGGC-GCCCU-----GCGG- -5'
29719 5' -49.8 NC_006273.1 + 94630 0.66 0.999812
Target:  5'- cCGCGGAAcgGAcgGgACC-CGGGguccGCGCCc -3'
miRNA:   3'- -GCGCUUUuuUU--UgUGGcGCCC----UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 8027 0.66 0.999812
Target:  5'- gGCcucGAcGAACGagaCGCGGcGACGCCu -3'
miRNA:   3'- gCGcuuUUuUUUGUg--GCGCC-CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 93861 0.66 0.999812
Target:  5'- uGCGcau----GCGCCG-GGGAUGUCg -3'
miRNA:   3'- gCGCuuuuuuuUGUGGCgCCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 21996 0.66 0.999812
Target:  5'- -cCGAAGAucGGGCugcugGCCGCGGGAUcggugGCCc -3'
miRNA:   3'- gcGCUUUUu-UUUG-----UGGCGCCCUG-----CGG- -5'
29719 5' -49.8 NC_006273.1 + 20752 0.66 0.999812
Target:  5'- gCGCGAGAGAAGGgAauGaUGGGA-GCCg -3'
miRNA:   3'- -GCGCUUUUUUUUgUggC-GCCCUgCGG- -5'
29719 5' -49.8 NC_006273.1 + 91703 0.66 0.999812
Target:  5'- cCGCGcu----AGCGCCgGUGGGGC-CCg -3'
miRNA:   3'- -GCGCuuuuuuUUGUGG-CGCCCUGcGG- -5'
29719 5' -49.8 NC_006273.1 + 64717 0.66 0.999812
Target:  5'- -aUGGAAGAGGGCGCgCGUcuGGACGCg -3'
miRNA:   3'- gcGCUUUUUUUUGUG-GCGc-CCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 137086 0.66 0.999812
Target:  5'- aCGCGAugcu--GCACaucccagaccuCGCGGaGACGCg -3'
miRNA:   3'- -GCGCUuuuuuuUGUG-----------GCGCC-CUGCGg -5'
29719 5' -49.8 NC_006273.1 + 142333 0.66 0.999793
Target:  5'- cCGUGGuaaccguCGCCGCuGGcGGCGCUg -3'
miRNA:   3'- -GCGCUuuuuuuuGUGGCG-CC-CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 89998 0.66 0.999783
Target:  5'- gGCGggGAuuccgggggaaugauGGGGCGCgGCGGucgcaugcugGGCGCUa -3'
miRNA:   3'- gCGCuuUU---------------UUUUGUGgCGCC----------CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 197068 0.66 0.999762
Target:  5'- gGCGGcagc-GGCAgCaGCGGcGGCGCCg -3'
miRNA:   3'- gCGCUuuuuuUUGUgG-CGCC-CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 30674 0.66 0.999762
Target:  5'- aGCGGGc----GCGCCuCGGGGCucGCCg -3'
miRNA:   3'- gCGCUUuuuuuUGUGGcGCCCUG--CGG- -5'
29719 5' -49.8 NC_006273.1 + 230305 0.66 0.999762
Target:  5'- cCGCGGuccu-AGCACgucaGUGGuGACGCUg -3'
miRNA:   3'- -GCGCUuuuuuUUGUGg---CGCC-CUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.