miRNA display CGI


Results 21 - 40 of 452 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 5' -49.8 NC_006273.1 + 72832 0.66 0.999816
Target:  5'- cCGCGGucgccgcaGCUGCGGGGCcucaucgcaGCCu -3'
miRNA:   3'- -GCGCUuuuuuuugUGGCGCCCUG---------CGG- -5'
29719 5' -49.8 NC_006273.1 + 1191 0.66 0.999626
Target:  5'- gGCGggGAcgGGgaGuuGCGGGAUGgCg -3'
miRNA:   3'- gCGCuuUUuuUUg-UggCGCCCUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 34015 0.66 0.999535
Target:  5'- gGCGugcuccAAACgggaAUgGUGGGACGCCa -3'
miRNA:   3'- gCGCuuuuu-UUUG----UGgCGCCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 150754 0.66 0.999701
Target:  5'- gCGCGcuGcAGAucaGCCGCcGGGCGCUg -3'
miRNA:   3'- -GCGCuuUuUUUug-UGGCGcCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 112209 0.66 0.999701
Target:  5'- gGCGGuugcuGGAGGACGCgGC-GGugGCa -3'
miRNA:   3'- gCGCUu----UUUUUUGUGgCGcCCugCGg -5'
29719 5' -49.8 NC_006273.1 + 30674 0.66 0.999762
Target:  5'- aGCGGGc----GCGCCuCGGGGCucGCCg -3'
miRNA:   3'- gCGCUUuuuuuUGUGGcGCCCUG--CGG- -5'
29719 5' -49.8 NC_006273.1 + 104368 0.66 0.999707
Target:  5'- gCGCGAGAGuugcagcguuucguuGuuCACgGCGaagacGGGCGCCa -3'
miRNA:   3'- -GCGCUUUUu--------------UuuGUGgCGC-----CCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 36719 0.66 0.999701
Target:  5'- cCGCGAGcgGAGGCGCgcgaGCGGcGGCacagcucgGCCc -3'
miRNA:   3'- -GCGCUUuuUUUUGUGg---CGCC-CUG--------CGG- -5'
29719 5' -49.8 NC_006273.1 + 134933 0.66 0.999701
Target:  5'- cCGcCGAcacc-GGCGCCGCGuGACGCg -3'
miRNA:   3'- -GC-GCUuuuuuUUGUGGCGCcCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 117972 0.66 0.999525
Target:  5'- gGCGAGGccGAGCACgGCcGGGcacgaaaGCGUCu -3'
miRNA:   3'- gCGCUUUuuUUUGUGgCG-CCC-------UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 68800 0.66 0.999701
Target:  5'- aGCGAcuGGAAcccGGACGCguaGcCGGcGGCGCCg -3'
miRNA:   3'- gCGCU--UUUU---UUUGUGg--C-GCC-CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 142208 0.66 0.999535
Target:  5'- aGCGu-GAGcgGCGuCCGCGGugGACGCa -3'
miRNA:   3'- gCGCuuUUUuuUGU-GGCGCC--CUGCGg -5'
29719 5' -49.8 NC_006273.1 + 20752 0.66 0.999812
Target:  5'- gCGCGAGAGAAGGgAauGaUGGGA-GCCg -3'
miRNA:   3'- -GCGCUUUUUUUUgUggC-GCCCUgCGG- -5'
29719 5' -49.8 NC_006273.1 + 148901 0.66 0.999762
Target:  5'- uCGUGGAAGucagcagcAGCACCgGCGGuGCGCa -3'
miRNA:   3'- -GCGCUUUUuu------UUGUGG-CGCCcUGCGg -5'
29719 5' -49.8 NC_006273.1 + 196941 0.66 0.999634
Target:  5'- gCGCGAuggcaggaGCCGUGGGGucUGCUg -3'
miRNA:   3'- -GCGCUuuuuuuugUGGCGCCCU--GCGG- -5'
29719 5' -49.8 NC_006273.1 + 212047 0.66 0.999535
Target:  5'- gCGCGAGGGu---CGCgGgggugGGGGCGCCc -3'
miRNA:   3'- -GCGCUUUUuuuuGUGgCg----CCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 209978 0.66 0.999535
Target:  5'- aCGCGGcaacagucGAcccAAGCcagACUGCGGGuCGCCa -3'
miRNA:   3'- -GCGCU--------UUuu-UUUG---UGGCGCCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 115591 0.66 0.999762
Target:  5'- uGUGGGugcGGACGgUGCGGG-UGCCg -3'
miRNA:   3'- gCGCUUuuuUUUGUgGCGCCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 63984 0.66 0.999762
Target:  5'- aCGCcAAGGGu--CACCGCacGGugGCCc -3'
miRNA:   3'- -GCGcUUUUUuuuGUGGCGc-CCugCGG- -5'
29719 5' -49.8 NC_006273.1 + 76274 0.66 0.999762
Target:  5'- gGCGGu----GGCACCaGCGGGGgGUUc -3'
miRNA:   3'- gCGCUuuuuuUUGUGG-CGCCCUgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.