miRNA display CGI


Results 41 - 60 of 452 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 5' -49.8 NC_006273.1 + 109706 0.66 0.999701
Target:  5'- aGCGggGAcgguGGCAUCGgGGaagaGACGCg -3'
miRNA:   3'- gCGCuuUUuu--UUGUGGCgCC----CUGCGg -5'
29719 5' -49.8 NC_006273.1 + 230305 0.66 0.999762
Target:  5'- cCGCGGuccu-AGCACgucaGUGGuGACGCUg -3'
miRNA:   3'- -GCGCUuuuuuUUGUGg---CGCC-CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 30674 0.66 0.999762
Target:  5'- aGCGGGc----GCGCCuCGGGGCucGCCg -3'
miRNA:   3'- gCGCUUuuuuuUGUGGcGCCCUG--CGG- -5'
29719 5' -49.8 NC_006273.1 + 1191 0.66 0.999626
Target:  5'- gGCGggGAcgGGgaGuuGCGGGAUGgCg -3'
miRNA:   3'- gCGCuuUUuuUUg-UggCGCCCUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 153069 0.66 0.99968
Target:  5'- cCGUGggGAAaaugucgauGAcggccucgucauccACGCCGCGGcccACGCCc -3'
miRNA:   3'- -GCGCuuUUU---------UU--------------UGUGGCGCCc--UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 68800 0.66 0.999701
Target:  5'- aGCGAcuGGAAcccGGACGCguaGcCGGcGGCGCCg -3'
miRNA:   3'- gCGCU--UUUU---UUUGUGg--C-GCC-CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 228192 0.66 0.999618
Target:  5'- uGCGAAcgucaccGGAGAccguccACGCCGuUGGGAaagaaCGCCg -3'
miRNA:   3'- gCGCUU-------UUUUU------UGUGGC-GCCCU-----GCGG- -5'
29719 5' -49.8 NC_006273.1 + 32261 0.66 0.999535
Target:  5'- gGCGcAGGugGGugGCgCGCGGGuCGCg -3'
miRNA:   3'- gCGC-UUUuuUUugUG-GCGCCCuGCGg -5'
29719 5' -49.8 NC_006273.1 + 8027 0.66 0.999812
Target:  5'- gGCcucGAcGAACGagaCGCGGcGACGCCu -3'
miRNA:   3'- gCGcuuUUuUUUGUg--GCGCC-CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 104368 0.66 0.999707
Target:  5'- gCGCGAGAGuugcagcguuucguuGuuCACgGCGaagacGGGCGCCa -3'
miRNA:   3'- -GCGCUUUUu--------------UuuGUGgCGC-----CCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 155265 0.66 0.999535
Target:  5'- aGCGGGAGcgGcgGCCGUGGcGGCGgCa -3'
miRNA:   3'- gCGCUUUUuuUugUGGCGCC-CUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 178434 0.66 0.999812
Target:  5'- gGCGggGaucuGAGAACcUCGuCGGGAaccgcUGCCa -3'
miRNA:   3'- gCGCuuU----UUUUUGuGGC-GCCCU-----GCGG- -5'
29719 5' -49.8 NC_006273.1 + 52988 0.66 0.999535
Target:  5'- aGCGuaacGGAGGACACagaGCGGGAgGaCa -3'
miRNA:   3'- gCGCuu--UUUUUUGUGg--CGCCCUgCgG- -5'
29719 5' -49.8 NC_006273.1 + 72832 0.66 0.999816
Target:  5'- cCGCGGucgccgcaGCUGCGGGGCcucaucgcaGCCu -3'
miRNA:   3'- -GCGCUuuuuuuugUGGCGCCCUG---------CGG- -5'
29719 5' -49.8 NC_006273.1 + 209978 0.66 0.999535
Target:  5'- aCGCGGcaacagucGAcccAAGCcagACUGCGGGuCGCCa -3'
miRNA:   3'- -GCGCU--------UUuu-UUUG---UGGCGCCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 34015 0.66 0.999535
Target:  5'- gGCGugcuccAAACgggaAUgGUGGGACGCCa -3'
miRNA:   3'- gCGCuuuuu-UUUG----UGgCGCCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 148901 0.66 0.999762
Target:  5'- uCGUGGAAGucagcagcAGCACCgGCGGuGCGCa -3'
miRNA:   3'- -GCGCUUUUuu------UUGUGG-CGCCcUGCGg -5'
29719 5' -49.8 NC_006273.1 + 36719 0.66 0.999701
Target:  5'- cCGCGAGcgGAGGCGCgcgaGCGGcGGCacagcucgGCCc -3'
miRNA:   3'- -GCGCUUuuUUUUGUGg---CGCC-CUG--------CGG- -5'
29719 5' -49.8 NC_006273.1 + 234157 0.66 0.999535
Target:  5'- gCGCGGcccgugcuguuGGccAGAAACGCCGCGcgccacacGGCGCCc -3'
miRNA:   3'- -GCGCU-----------UU--UUUUUGUGGCGCc-------CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 117972 0.66 0.999525
Target:  5'- gGCGAGGccGAGCACgGCcGGGcacgaaaGCGUCu -3'
miRNA:   3'- gCGCUUUuuUUUGUGgCG-CCC-------UGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.