miRNA display CGI


Results 61 - 80 of 452 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 5' -49.8 NC_006273.1 + 8027 0.66 0.999812
Target:  5'- gGCcucGAcGAACGagaCGCGGcGACGCCu -3'
miRNA:   3'- gCGcuuUUuUUUGUg--GCGCC-CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 1865 0.66 0.999626
Target:  5'- uGCGAAAAuGAGCGCUuuccuGUGGGuugGCGUUg -3'
miRNA:   3'- gCGCUUUUuUUUGUGG-----CGCCC---UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 93861 0.66 0.999812
Target:  5'- uGCGcau----GCGCCG-GGGAUGUCg -3'
miRNA:   3'- gCGCuuuuuuuUGUGGCgCCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 104323 0.66 0.999812
Target:  5'- gGCGAu---GAGCGCCGagaggGGGAUggGCUg -3'
miRNA:   3'- gCGCUuuuuUUUGUGGCg----CCCUG--CGG- -5'
29719 5' -49.8 NC_006273.1 + 34140 0.66 0.999535
Target:  5'- cCGCGuAGAGGuccuucAACGCCGCuucGGcucGCGCCa -3'
miRNA:   3'- -GCGCuUUUUU------UUGUGGCGc--CC---UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 117972 0.66 0.999525
Target:  5'- gGCGAGGccGAGCACgGCcGGGcacgaaaGCGUCu -3'
miRNA:   3'- gCGCUUUuuUUUGUGgCG-CCC-------UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 132587 0.66 0.999535
Target:  5'- uCGUGAugcAAAccGCACuCGCGGcGACGUg -3'
miRNA:   3'- -GCGCUu--UUUuuUGUG-GCGCC-CUGCGg -5'
29719 5' -49.8 NC_006273.1 + 163782 0.66 0.999626
Target:  5'- uCGCGAcGGAGAAACaACCGCcaugaGGACGa- -3'
miRNA:   3'- -GCGCU-UUUUUUUG-UGGCGc----CCUGCgg -5'
29719 5' -49.8 NC_006273.1 + 212047 0.66 0.999535
Target:  5'- gCGCGAGGGu---CGCgGgggugGGGGCGCCc -3'
miRNA:   3'- -GCGCUUUUuuuuGUGgCg----CCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 209978 0.66 0.999535
Target:  5'- aCGCGGcaacagucGAcccAAGCcagACUGCGGGuCGCCa -3'
miRNA:   3'- -GCGCU--------UUuu-UUUG---UGGCGCCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 70536 0.66 0.999626
Target:  5'- aCGCGGAucaucuGAAGCACCggcucuccgGUGGGGaGCUg -3'
miRNA:   3'- -GCGCUUuu----UUUUGUGG---------CGCCCUgCGG- -5'
29719 5' -49.8 NC_006273.1 + 117575 0.66 0.999535
Target:  5'- cCGCGGGAAGA---ACgGaCGGcGACGCUg -3'
miRNA:   3'- -GCGCUUUUUUuugUGgC-GCC-CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 52988 0.66 0.999535
Target:  5'- aGCGuaacGGAGGACACagaGCGGGAgGaCa -3'
miRNA:   3'- gCGCuu--UUUUUUGUGg--CGCCCUgCgG- -5'
29719 5' -49.8 NC_006273.1 + 1191 0.66 0.999626
Target:  5'- gGCGggGAcgGGgaGuuGCGGGAUGgCg -3'
miRNA:   3'- gCGCuuUUuuUUg-UggCGCCCUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 211181 0.66 0.999626
Target:  5'- gGUGGAGAcggccGGCGCgGCGGGugGg- -3'
miRNA:   3'- gCGCUUUUuu---UUGUGgCGCCCugCgg -5'
29719 5' -49.8 NC_006273.1 + 119351 0.66 0.999626
Target:  5'- aGCGGGccggcuucuauGGAGACGCC-CGGGAUGUUu -3'
miRNA:   3'- gCGCUUu----------UUUUUGUGGcGCCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 196941 0.66 0.999634
Target:  5'- gCGCGAuggcaggaGCCGUGGGGucUGCUg -3'
miRNA:   3'- -GCGCUuuuuuuugUGGCGCCCU--GCGG- -5'
29719 5' -49.8 NC_006273.1 + 153069 0.66 0.99968
Target:  5'- cCGUGggGAAaaugucgauGAcggccucgucauccACGCCGCGGcccACGCCc -3'
miRNA:   3'- -GCGCuuUUU---------UU--------------UGUGGCGCCc--UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 34656 0.66 0.99968
Target:  5'- gGCGAAugu--ACACCaugGCGugcuugggauguuuGGGCGCCg -3'
miRNA:   3'- gCGCUUuuuuuUGUGG---CGC--------------CCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 49602 0.66 0.999626
Target:  5'- cCGCaGAAAAuccuuCAUgGUGGG-CGCCa -3'
miRNA:   3'- -GCG-CUUUUuuuu-GUGgCGCCCuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.