miRNA display CGI


Results 1 - 20 of 452 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 5' -49.8 NC_006273.1 + 194643 1.14 0.009756
Target:  5'- cCGCGAAAAAAAACACCGCGGGACGCCa -3'
miRNA:   3'- -GCGCUUUUUUUUGUGGCGCCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 1065 1.14 0.009756
Target:  5'- cCGCGAAAAAAAACACCGCGGGACGCCa -3'
miRNA:   3'- -GCGCUUUUUUUUGUGGCGCCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 156974 0.84 0.48318
Target:  5'- aCGCGAGAAGGGGCcgggguCCGCGGGcacCGCCg -3'
miRNA:   3'- -GCGCUUUUUUUUGu-----GGCGCCCu--GCGG- -5'
29719 5' -49.8 NC_006273.1 + 22112 0.83 0.541704
Target:  5'- gGCGGAGGAAAcUGCCGCGGGAgaaGCCu -3'
miRNA:   3'- gCGCUUUUUUUuGUGGCGCCCUg--CGG- -5'
29719 5' -49.8 NC_006273.1 + 129447 0.81 0.616726
Target:  5'- aCGgGAAAAAugcuguuccacguacAggUGCCGCGGGugGCCa -3'
miRNA:   3'- -GCgCUUUUU---------------UuuGUGGCGCCCugCGG- -5'
29719 5' -49.8 NC_006273.1 + 82794 0.81 0.65363
Target:  5'- aGCGGccu-GGGCGCCGCGGGAaagGCCg -3'
miRNA:   3'- gCGCUuuuuUUUGUGGCGCCCUg--CGG- -5'
29719 5' -49.8 NC_006273.1 + 196264 0.8 0.695363
Target:  5'- uGCGucagcuguCGCCGCGGGACGCg -3'
miRNA:   3'- gCGCuuuuuuuuGUGGCGCCCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 234275 0.8 0.695363
Target:  5'- uGCGucagcuguCGCCGCGGGACGCg -3'
miRNA:   3'- gCGCuuuuuuuuGUGGCGCCCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 38156 0.79 0.712439
Target:  5'- aCGCGGuuuauauACACCgucucggacgGCGGGACGCCg -3'
miRNA:   3'- -GCGCUuuuuuu-UGUGG----------CGCCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 147637 0.79 0.714436
Target:  5'- gGUGAAAAAAGACcCCGCGGGccuuCGCg -3'
miRNA:   3'- gCGCUUUUUUUUGuGGCGCCCu---GCGg -5'
29719 5' -49.8 NC_006273.1 + 56638 0.79 0.753683
Target:  5'- cCGCGAugGAGAAAACGCCgGCGGaGACGaCg -3'
miRNA:   3'- -GCGCU--UUUUUUUGUGG-CGCC-CUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 71728 0.78 0.770818
Target:  5'- gCGCGcagccucGACACaGCGGGGCGCCg -3'
miRNA:   3'- -GCGCuuuuuu-UUGUGgCGCCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 178133 0.78 0.769876
Target:  5'- cCGCGGAAAAAAACgauuauuaccgaguACCGCauuacuGGGACGCg -3'
miRNA:   3'- -GCGCUUUUUUUUG--------------UGGCG------CCCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 98038 0.78 0.771759
Target:  5'- cCGCccGAGAGAACACCGUcuucuccGGGACGUCu -3'
miRNA:   3'- -GCGcuUUUUUUUGUGGCG-------CCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 60248 0.78 0.800254
Target:  5'- cCGCGAcu--GGGCACgGCGGGAcCGCUg -3'
miRNA:   3'- -GCGCUuuuuUUUGUGgCGCCCU-GCGG- -5'
29719 5' -49.8 NC_006273.1 + 145059 0.78 0.763249
Target:  5'- aCGCGAGucucGGCcuaGCCGCGGGcgACGCCg -3'
miRNA:   3'- -GCGCUUuuuuUUG---UGGCGCCC--UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 44097 0.78 0.782022
Target:  5'- uCGUGGAAAGugcugcuGACGCUaguGUGGGGCGCCg -3'
miRNA:   3'- -GCGCUUUUUu------UUGUGG---CGCCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 37408 0.78 0.772698
Target:  5'- cCGCGAcu--GAGCGCCGgGGcGCGCCg -3'
miRNA:   3'- -GCGCUuuuuUUUGUGGCgCCcUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 93934 0.78 0.772698
Target:  5'- gCGCGGGccAGGAC-CCGCGGGaggcGCGCCc -3'
miRNA:   3'- -GCGCUUuuUUUUGuGGCGCCC----UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 151719 0.78 0.800254
Target:  5'- aGCGGAcgGAAGGGCGCCGCGucgcGCGCCu -3'
miRNA:   3'- gCGCUU--UUUUUUGUGGCGCcc--UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.