Results 21 - 40 of 452 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29719 | 5' | -49.8 | NC_006273.1 | + | 60248 | 0.78 | 0.800254 |
Target: 5'- cCGCGAcu--GGGCACgGCGGGAcCGCUg -3' miRNA: 3'- -GCGCUuuuuUUUGUGgCGCCCU-GCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 48267 | 0.77 | 0.826437 |
Target: 5'- aGCGAcgucGAAGAC-CCGCGGGACgaucugGCCg -3' miRNA: 3'- gCGCUuu--UUUUUGuGGCGCCCUG------CGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 143839 | 0.77 | 0.81701 |
Target: 5'- gGCGggGAAAAuacugagGCGCCGCcaucaucauguGGGGCGUCu -3' miRNA: 3'- gCGCuuUUUUU-------UGUGGCG-----------CCCUGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 40464 | 0.77 | 0.809146 |
Target: 5'- gGCGcc--AAAACGCCGUcGGACGCCg -3' miRNA: 3'- gCGCuuuuUUUUGUGGCGcCCUGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 71826 | 0.77 | 0.826437 |
Target: 5'- uGCGAAGuGAGACGCaggagaCGCGGGAccgcaCGCCg -3' miRNA: 3'- gCGCUUUuUUUUGUG------GCGCCCU-----GCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 75965 | 0.77 | 0.843019 |
Target: 5'- aGCGugcu-GAGCGCCGCacGGGGCGCg -3' miRNA: 3'- gCGCuuuuuUUUGUGGCG--CCCUGCGg -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 210784 | 0.77 | 0.846244 |
Target: 5'- gCGCGGAggccacaggcaccagGAGGAGCACCuCGGG-CGCCc -3' miRNA: 3'- -GCGCUU---------------UUUUUUGUGGcGCCCuGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 64156 | 0.77 | 0.826437 |
Target: 5'- uCGCGAGAAcuuGGAACGCCGCGG--CGCa -3' miRNA: 3'- -GCGCUUUU---UUUUGUGGCGCCcuGCGg -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 233195 | 0.76 | 0.858831 |
Target: 5'- cCGCGAGcaguGGGAGCgGCCGCgcuGGGACGCg -3' miRNA: 3'- -GCGCUUu---UUUUUG-UGGCG---CCCUGCGg -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 190066 | 0.76 | 0.851025 |
Target: 5'- gGCGggGGGacGAACACCGUcGG-CGCCg -3' miRNA: 3'- gCGCuuUUU--UUUGUGGCGcCCuGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 197344 | 0.76 | 0.858831 |
Target: 5'- cCGCGAGcaguGGGAGCgGCCGCgcuGGGACGCg -3' miRNA: 3'- -GCGCUUu---UUUUUG-UGGCG---CCCUGCGg -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 37265 | 0.76 | 0.866432 |
Target: 5'- aCGaGGAGGAAGACGCCGUGGc-CGCCg -3' miRNA: 3'- -GCgCUUUUUUUUGUGGCGCCcuGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 99662 | 0.76 | 0.866432 |
Target: 5'- gGUGAcuccGGACACCGgcgaGGGGCGCCg -3' miRNA: 3'- gCGCUuuuuUUUGUGGCg---CCCUGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 35200 | 0.76 | 0.866432 |
Target: 5'- gGCGAGAagcAAAAACGCCGUGGGcaACGaaaCCa -3' miRNA: 3'- gCGCUUU---UUUUUGUGGCGCCC--UGC---GG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 113721 | 0.76 | 0.880287 |
Target: 5'- uCGCGAGGAc-AGCGCCggagguggcgacgGCGGcGGCGCCg -3' miRNA: 3'- -GCGCUUUUuuUUGUGG-------------CGCC-CUGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 178857 | 0.76 | 0.880994 |
Target: 5'- gCGCGAAGGGGAcC-CCGCGGGGCcgGCa -3' miRNA: 3'- -GCGCUUUUUUUuGuGGCGCCCUG--CGg -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 61333 | 0.76 | 0.858831 |
Target: 5'- aCGUGGGAAGAGAC-CCG-GGGACGgCu -3' miRNA: 3'- -GCGCUUUUUUUUGuGGCgCCCUGCgG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 151953 | 0.76 | 0.866432 |
Target: 5'- gGCGguGGAGGACaACCGCcuGGugGCCa -3' miRNA: 3'- gCGCuuUUUUUUG-UGGCGc-CCugCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 94480 | 0.76 | 0.866432 |
Target: 5'- cCGCGGAcu---GCGCCGgGGGGCGgCg -3' miRNA: 3'- -GCGCUUuuuuuUGUGGCgCCCUGCgG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 127208 | 0.75 | 0.913444 |
Target: 5'- aCGCGGuacguccGAAACGCCGUGGuGucGCGCCu -3' miRNA: 3'- -GCGCUuuu----UUUUGUGGCGCC-C--UGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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