miRNA display CGI


Results 21 - 40 of 452 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 5' -49.8 NC_006273.1 + 151719 0.78 0.800254
Target:  5'- aGCGGAcgGAAGGGCGCCGCGucgcGCGCCu -3'
miRNA:   3'- gCGCUU--UUUUUUGUGGCGCcc--UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 40464 0.77 0.809146
Target:  5'- gGCGcc--AAAACGCCGUcGGACGCCg -3'
miRNA:   3'- gCGCuuuuUUUUGUGGCGcCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 143839 0.77 0.81701
Target:  5'- gGCGggGAAAAuacugagGCGCCGCcaucaucauguGGGGCGUCu -3'
miRNA:   3'- gCGCuuUUUUU-------UGUGGCG-----------CCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 71826 0.77 0.826437
Target:  5'- uGCGAAGuGAGACGCaggagaCGCGGGAccgcaCGCCg -3'
miRNA:   3'- gCGCUUUuUUUUGUG------GCGCCCU-----GCGG- -5'
29719 5' -49.8 NC_006273.1 + 64156 0.77 0.826437
Target:  5'- uCGCGAGAAcuuGGAACGCCGCGG--CGCa -3'
miRNA:   3'- -GCGCUUUU---UUUUGUGGCGCCcuGCGg -5'
29719 5' -49.8 NC_006273.1 + 48267 0.77 0.826437
Target:  5'- aGCGAcgucGAAGAC-CCGCGGGACgaucugGCCg -3'
miRNA:   3'- gCGCUuu--UUUUUGuGGCGCCCUG------CGG- -5'
29719 5' -49.8 NC_006273.1 + 75965 0.77 0.843019
Target:  5'- aGCGugcu-GAGCGCCGCacGGGGCGCg -3'
miRNA:   3'- gCGCuuuuuUUUGUGGCG--CCCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 210784 0.77 0.846244
Target:  5'- gCGCGGAggccacaggcaccagGAGGAGCACCuCGGG-CGCCc -3'
miRNA:   3'- -GCGCUU---------------UUUUUUGUGGcGCCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 190066 0.76 0.851025
Target:  5'- gGCGggGGGacGAACACCGUcGG-CGCCg -3'
miRNA:   3'- gCGCuuUUU--UUUGUGGCGcCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 61333 0.76 0.858831
Target:  5'- aCGUGGGAAGAGAC-CCG-GGGACGgCu -3'
miRNA:   3'- -GCGCUUUUUUUUGuGGCgCCCUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 233195 0.76 0.858831
Target:  5'- cCGCGAGcaguGGGAGCgGCCGCgcuGGGACGCg -3'
miRNA:   3'- -GCGCUUu---UUUUUG-UGGCG---CCCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 197344 0.76 0.858831
Target:  5'- cCGCGAGcaguGGGAGCgGCCGCgcuGGGACGCg -3'
miRNA:   3'- -GCGCUUu---UUUUUG-UGGCG---CCCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 151953 0.76 0.866432
Target:  5'- gGCGguGGAGGACaACCGCcuGGugGCCa -3'
miRNA:   3'- gCGCuuUUUUUUG-UGGCGc-CCugCGG- -5'
29719 5' -49.8 NC_006273.1 + 37265 0.76 0.866432
Target:  5'- aCGaGGAGGAAGACGCCGUGGc-CGCCg -3'
miRNA:   3'- -GCgCUUUUUUUUGUGGCGCCcuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 99662 0.76 0.866432
Target:  5'- gGUGAcuccGGACACCGgcgaGGGGCGCCg -3'
miRNA:   3'- gCGCUuuuuUUUGUGGCg---CCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 35200 0.76 0.866432
Target:  5'- gGCGAGAagcAAAAACGCCGUGGGcaACGaaaCCa -3'
miRNA:   3'- gCGCUUU---UUUUUGUGGCGCCC--UGC---GG- -5'
29719 5' -49.8 NC_006273.1 + 94480 0.76 0.866432
Target:  5'- cCGCGGAcu---GCGCCGgGGGGCGgCg -3'
miRNA:   3'- -GCGCUUuuuuuUGUGGCgCCCUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 113721 0.76 0.880287
Target:  5'- uCGCGAGGAc-AGCGCCggagguggcgacgGCGGcGGCGCCg -3'
miRNA:   3'- -GCGCUUUUuuUUGUGG-------------CGCC-CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 178857 0.76 0.880994
Target:  5'- gCGCGAAGGGGAcC-CCGCGGGGCcgGCa -3'
miRNA:   3'- -GCGCUUUUUUUuGuGGCGCCCUG--CGg -5'
29719 5' -49.8 NC_006273.1 + 113542 0.75 0.894667
Target:  5'- gGCGAAGAGAAGgGCuaCGgGGGACGgCa -3'
miRNA:   3'- gCGCUUUUUUUUgUG--GCgCCCUGCgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.