miRNA display CGI


Results 41 - 60 of 452 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 5' -49.8 NC_006273.1 + 209532 0.75 0.894667
Target:  5'- uGCGGAu----ACGCCGCcGGGCGCUg -3'
miRNA:   3'- gCGCUUuuuuuUGUGGCGcCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 189864 0.75 0.894667
Target:  5'- gGCGggGGGAGACgcgucgggcggACCGcCGGGcauCGCCg -3'
miRNA:   3'- gCGCuuUUUUUUG-----------UGGC-GCCCu--GCGG- -5'
29719 5' -49.8 NC_006273.1 + 113542 0.75 0.894667
Target:  5'- gGCGAAGAGAAGgGCuaCGgGGGACGgCa -3'
miRNA:   3'- gCGCUUUUUUUUgUG--GCgCCCUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 1090 0.75 0.894667
Target:  5'- uGCGggGAcGGGGCGUCGCGGGAUGgCg -3'
miRNA:   3'- gCGCuuUU-UUUUGUGGCGCCCUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 126130 0.75 0.90742
Target:  5'- aCGCGAAAGAGGuccuGCA-CGCGG-ACGCCc -3'
miRNA:   3'- -GCGCUUUUUUU----UGUgGCGCCcUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 127208 0.75 0.913444
Target:  5'- aCGCGGuacguccGAAACGCCGUGGuGucGCGCCu -3'
miRNA:   3'- -GCGCUuuu----UUUUGUGGCGCC-C--UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 132723 0.75 0.913444
Target:  5'- uGCGAGugguGAGAGCGCCGgGGaGACGaCg -3'
miRNA:   3'- gCGCUUu---UUUUUGUGGCgCC-CUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 56976 0.74 0.919229
Target:  5'- gGCGgcAAGAAGCacgACCGCGGuGGCGgCg -3'
miRNA:   3'- gCGCuuUUUUUUG---UGGCGCC-CUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 158696 0.74 0.924774
Target:  5'- cCGUGAGGcAGGGCACaCGCGGGuCGgCg -3'
miRNA:   3'- -GCGCUUUuUUUUGUG-GCGCCCuGCgG- -5'
29719 5' -49.8 NC_006273.1 + 221633 0.74 0.93008
Target:  5'- gCGCGggGu--GGCGgaGCGGGgaGCGCCg -3'
miRNA:   3'- -GCGCuuUuuuUUGUggCGCCC--UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 117884 0.74 0.93008
Target:  5'- aCGCGggG----GCGCCGUaGGACGCg -3'
miRNA:   3'- -GCGCuuUuuuuUGUGGCGcCCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 195951 0.74 0.933149
Target:  5'- gGCGuccaccggguAGAACcCCGCGGGcCGCCg -3'
miRNA:   3'- gCGCuuuu------UUUUGuGGCGCCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 234588 0.74 0.933149
Target:  5'- gGCGuccaccggguAGAACcCCGCGGGcCGCCg -3'
miRNA:   3'- gCGCuuuu------UUUUGuGGCGCCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 64366 0.74 0.93465
Target:  5'- gCGCGuu-----GCACCGCGGuaacgacGGCGCCa -3'
miRNA:   3'- -GCGCuuuuuuuUGUGGCGCC-------CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 127450 0.74 0.935146
Target:  5'- uGCGGuaguGAAAGAGCaACUGCGgugguaGGGCGCCa -3'
miRNA:   3'- gCGCU----UUUUUUUG-UGGCGC------CCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 72632 0.74 0.935146
Target:  5'- gGCGGu--AGGACA-CGCGGG-CGCCg -3'
miRNA:   3'- gCGCUuuuUUUUGUgGCGCCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 97341 0.74 0.935146
Target:  5'- uCGaGAAGAAAGAgACCGCGucucuGGACGCUc -3'
miRNA:   3'- -GCgCUUUUUUUUgUGGCGC-----CCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 119167 0.74 0.935146
Target:  5'- cCGUGGAAAGAGACcggcgcgcaGCUGCaccugGGGACGCUu -3'
miRNA:   3'- -GCGCUUUUUUUUG---------UGGCG-----CCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 41485 0.74 0.935146
Target:  5'- cCGCGGugacacAAACAgCGUcucGGGACGCCg -3'
miRNA:   3'- -GCGCUuuuu--UUUGUgGCG---CCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 179221 0.74 0.939973
Target:  5'- gCGCGGugacguACGCCGCGGGGCu-- -3'
miRNA:   3'- -GCGCUuuuuuuUGUGGCGCCCUGcgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.