miRNA display CGI


Results 61 - 80 of 452 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 5' -49.8 NC_006273.1 + 41805 0.74 0.939973
Target:  5'- uGCGggGAaacGAGACugaaaGCCGCGuGACGCUg -3'
miRNA:   3'- gCGCuuUU---UUUUG-----UGGCGCcCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 154821 0.74 0.939973
Target:  5'- gGUGGcaacGAcGugGCCGCGGGGCGCa -3'
miRNA:   3'- gCGCUuu--UUuUugUGGCGCCCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 105915 0.73 0.944113
Target:  5'- aCGCGGAGGAAGcaaggccgcCGCCGUGGGuuucuuuuucuucACGCCc -3'
miRNA:   3'- -GCGCUUUUUUUu--------GUGGCGCCC-------------UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 152284 0.73 0.944561
Target:  5'- cCGUGGuGGGAGGAC-CCGCGGGccACGUCg -3'
miRNA:   3'- -GCGCU-UUUUUUUGuGGCGCCC--UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 113900 0.73 0.944561
Target:  5'- cCGgGAAAGAGugcgacagcGugACCGCGGGGuCGCg -3'
miRNA:   3'- -GCgCUUUUUU---------UugUGGCGCCCU-GCGg -5'
29719 5' -49.8 NC_006273.1 + 120921 0.73 0.944561
Target:  5'- cCGCGGAAGugGAGGCGCuCGCcauGGCGCCg -3'
miRNA:   3'- -GCGCUUUU--UUUUGUG-GCGcc-CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 100307 0.73 0.953034
Target:  5'- gCGCGAGAAGGAGCACaCGUaGGccauGGCGCg -3'
miRNA:   3'- -GCGCUUUUUUUUGUG-GCG-CC----CUGCGg -5'
29719 5' -49.8 NC_006273.1 + 149492 0.73 0.953034
Target:  5'- uCGCGGc--GGGACAUUGCGGuGGCGCUu -3'
miRNA:   3'- -GCGCUuuuUUUUGUGGCGCC-CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 218296 0.73 0.953034
Target:  5'- cCGCGAAGu----CGCCGCGGaccacgcGCGCCu -3'
miRNA:   3'- -GCGCUUUuuuuuGUGGCGCCc------UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 222781 0.73 0.954617
Target:  5'- gGCGuuuucacuACGCCGUGGacGACGCCg -3'
miRNA:   3'- gCGCuuuuuuu-UGUGGCGCC--CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 164583 0.73 0.960232
Target:  5'- aGCGcc-GGGAGCaucugguguucauGCUGUGGGGCGCCg -3'
miRNA:   3'- gCGCuuuUUUUUG-------------UGGCGCCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 64297 0.73 0.960588
Target:  5'- aCGCGAGuucuuGGAGGCGCCcUGGGaaucgGCGCCc -3'
miRNA:   3'- -GCGCUUu----UUUUUGUGGcGCCC-----UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 118422 0.73 0.960588
Target:  5'- uGgGGAGGAAGAgGCCGCagagGGGAgagcCGCCg -3'
miRNA:   3'- gCgCUUUUUUUUgUGGCG----CCCU----GCGG- -5'
29719 5' -49.8 NC_006273.1 + 137501 0.73 0.960588
Target:  5'- cCGCGGuccGAAAAGCAgcucCUGCGguuuGGGCGCCg -3'
miRNA:   3'- -GCGCUu--UUUUUUGU----GGCGC----CCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 1706 0.72 0.964032
Target:  5'- gCGCGGAAAuc--CGCCGCGgcGGugGCg -3'
miRNA:   3'- -GCGCUUUUuuuuGUGGCGC--CCugCGg -5'
29719 5' -49.8 NC_006273.1 + 188664 0.72 0.964032
Target:  5'- gGCGuAAGAGAAACcgacccACCGCGuccccGACGCCg -3'
miRNA:   3'- gCGC-UUUUUUUUG------UGGCGCc----CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 228685 0.72 0.964032
Target:  5'- uCGCGuuGAcacuGGAGCGCCGCGGucucGAUGCg -3'
miRNA:   3'- -GCGCuuUU----UUUUGUGGCGCC----CUGCGg -5'
29719 5' -49.8 NC_006273.1 + 121215 0.72 0.964032
Target:  5'- aGCGu---AAGACGCCccgcgucaccgGCGGcGGCGCCa -3'
miRNA:   3'- gCGCuuuuUUUUGUGG-----------CGCC-CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 121071 0.72 0.964032
Target:  5'- uCGCGcccGAAGAGGACACCGaCGaGGAUuCCg -3'
miRNA:   3'- -GCGC---UUUUUUUUGUGGC-GC-CCUGcGG- -5'
29719 5' -49.8 NC_006273.1 + 78840 0.72 0.964032
Target:  5'- aGCGcGAGAGGACGuCaCGCGuGACGCCc -3'
miRNA:   3'- gCGCuUUUUUUUGU-G-GCGCcCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.