miRNA display CGI


Results 41 - 60 of 452 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 5' -49.8 NC_006273.1 + 199000 0.66 0.999701
Target:  5'- uGCGGGAAcuGGCcugGCgGCGGGuaGCCg -3'
miRNA:   3'- gCGCUUUUuuUUG---UGgCGCCCugCGG- -5'
29719 5' -49.8 NC_006273.1 + 72487 0.66 0.999701
Target:  5'- uGCGAGcgccaucuGGAugcGCGCuCGCuGGugGCCg -3'
miRNA:   3'- gCGCUU--------UUUuu-UGUG-GCGcCCugCGG- -5'
29719 5' -49.8 NC_006273.1 + 227543 0.66 0.999701
Target:  5'- aCGCGucgccAGAAAAGCAgCG-GGuGACGCa -3'
miRNA:   3'- -GCGCu----UUUUUUUGUgGCgCC-CUGCGg -5'
29719 5' -49.8 NC_006273.1 + 109706 0.66 0.999701
Target:  5'- aGCGggGAcgguGGCAUCGgGGaagaGACGCg -3'
miRNA:   3'- gCGCuuUUuu--UUGUGGCgCC----CUGCGg -5'
29719 5' -49.8 NC_006273.1 + 7793 0.66 0.999701
Target:  5'- uGCGAGAGu--ACACgaUGGGugGCUc -3'
miRNA:   3'- gCGCUUUUuuuUGUGgcGCCCugCGG- -5'
29719 5' -49.8 NC_006273.1 + 150754 0.66 0.999701
Target:  5'- gCGCGcuGcAGAucaGCCGCcGGGCGCUg -3'
miRNA:   3'- -GCGCuuUuUUUug-UGGCGcCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 112209 0.66 0.999701
Target:  5'- gGCGGuugcuGGAGGACGCgGC-GGugGCa -3'
miRNA:   3'- gCGCUu----UUUUUUGUGgCGcCCugCGg -5'
29719 5' -49.8 NC_006273.1 + 36719 0.66 0.999701
Target:  5'- cCGCGAGcgGAGGCGCgcgaGCGGcGGCacagcucgGCCc -3'
miRNA:   3'- -GCGCUUuuUUUUGUGg---CGCC-CUG--------CGG- -5'
29719 5' -49.8 NC_006273.1 + 217689 0.66 0.999701
Target:  5'- uCGCGGcu--GGugGCCcaggggGUGGGACGCg -3'
miRNA:   3'- -GCGCUuuuuUUugUGG------CGCCCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 134933 0.66 0.999701
Target:  5'- cCGcCGAcacc-GGCGCCGCGuGACGCg -3'
miRNA:   3'- -GC-GCUuuuuuUUGUGGCGCcCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 68800 0.66 0.999701
Target:  5'- aGCGAcuGGAAcccGGACGCguaGcCGGcGGCGCCg -3'
miRNA:   3'- gCGCU--UUUU---UUUGUGg--C-GCC-CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 121130 0.66 0.999701
Target:  5'- gGCGAcggcguGCACgGCGGG-CGUUa -3'
miRNA:   3'- gCGCUuuuuuuUGUGgCGCCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 153069 0.66 0.99968
Target:  5'- cCGUGggGAAaaugucgauGAcggccucgucauccACGCCGCGGcccACGCCc -3'
miRNA:   3'- -GCGCuuUUU---------UU--------------UGUGGCGCCc--UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 34656 0.66 0.99968
Target:  5'- gGCGAAugu--ACACCaugGCGugcuugggauguuuGGGCGCCg -3'
miRNA:   3'- gCGCUUuuuuuUGUGG---CGC--------------CCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 34487 0.66 0.999673
Target:  5'- gGCGGcccugu--GCCGCGGGuuGCCc -3'
miRNA:   3'- gCGCUuuuuuuugUGGCGCCCugCGG- -5'
29719 5' -49.8 NC_006273.1 + 55903 0.66 0.999658
Target:  5'- gCGCGAAGAAcuGGGCuauguccgcuucgagACCgGCGGcGACGUg -3'
miRNA:   3'- -GCGCUUUUU--UUUG---------------UGG-CGCC-CUGCGg -5'
29719 5' -49.8 NC_006273.1 + 233598 0.66 0.999634
Target:  5'- gCGCGAuggcaggaGCCGUGGGGucUGCUg -3'
miRNA:   3'- -GCGCUuuuuuuugUGGCGCCCU--GCGG- -5'
29719 5' -49.8 NC_006273.1 + 196941 0.66 0.999634
Target:  5'- gCGCGAuggcaggaGCCGUGGGGucUGCUg -3'
miRNA:   3'- -GCGCUuuuuuuugUGGCGCCCU--GCGG- -5'
29719 5' -49.8 NC_006273.1 + 1191 0.66 0.999626
Target:  5'- gGCGggGAcgGGgaGuuGCGGGAUGgCg -3'
miRNA:   3'- gCGCuuUUuuUUg-UggCGCCCUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 49602 0.66 0.999626
Target:  5'- cCGCaGAAAAuccuuCAUgGUGGG-CGCCa -3'
miRNA:   3'- -GCG-CUUUUuuuu-GUGgCGCCCuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.