miRNA display CGI


Results 1 - 20 of 452 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 5' -49.8 NC_006273.1 + 128 0.67 0.99914
Target:  5'- gGCGAAuAAAAGCgACgUGCGGcGCGCa -3'
miRNA:   3'- gCGCUUuUUUUUG-UG-GCGCCcUGCGg -5'
29719 5' -49.8 NC_006273.1 + 825 0.69 0.996473
Target:  5'- uCGCGGAcc--AGCGCCG-GGGACGg- -3'
miRNA:   3'- -GCGCUUuuuuUUGUGGCgCCCUGCgg -5'
29719 5' -49.8 NC_006273.1 + 884 0.69 0.9936
Target:  5'- gCGCGc-AGAAAGCGCCGUGGacagcaaGCCg -3'
miRNA:   3'- -GCGCuuUUUUUUGUGGCGCCcug----CGG- -5'
29719 5' -49.8 NC_006273.1 + 1065 1.14 0.009756
Target:  5'- cCGCGAAAAAAAACACCGCGGGACGCCa -3'
miRNA:   3'- -GCGCUUUUUUUUGUGGCGCCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 1090 0.75 0.894667
Target:  5'- uGCGggGAcGGGGCGUCGCGGGAUGgCg -3'
miRNA:   3'- gCGCuuUU-UUUUGUGGCGCCCUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 1191 0.66 0.999626
Target:  5'- gGCGggGAcgGGgaGuuGCGGGAUGgCg -3'
miRNA:   3'- gCGCuuUUuuUUg-UggCGCCCUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 1501 0.7 0.992646
Target:  5'- aCGCaGAugGAGcucGACGCCGCGGacuACGCUg -3'
miRNA:   3'- -GCG-CUuuUUU---UUGUGGCGCCc--UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 1706 0.72 0.964032
Target:  5'- gCGCGGAAAuc--CGCCGCGgcGGugGCg -3'
miRNA:   3'- -GCGCUUUUuuuuGUGGCGC--CCugCGg -5'
29719 5' -49.8 NC_006273.1 + 1865 0.66 0.999626
Target:  5'- uGCGAAAAuGAGCGCUuuccuGUGGGuugGCGUUg -3'
miRNA:   3'- gCGCUUUUuUUUGUGG-----CGCCC---UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 1944 0.69 0.995881
Target:  5'- gCGCGggGGAcgggguagccGAGCGCUGCGcccuCGCCu -3'
miRNA:   3'- -GCGCuuUUU----------UUUGUGGCGCccu-GCGG- -5'
29719 5' -49.8 NC_006273.1 + 2228 0.7 0.992646
Target:  5'- aCGCGGu---GAACGuggCGCGuGGAUGCCg -3'
miRNA:   3'- -GCGCUuuuuUUUGUg--GCGC-CCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 4592 0.71 0.982431
Target:  5'- aGCGGuggu-GGCGCUGgGGGugGCg -3'
miRNA:   3'- gCGCUuuuuuUUGUGGCgCCCugCGg -5'
29719 5' -49.8 NC_006273.1 + 7721 0.68 0.997274
Target:  5'- aGCGggGAGGAGaggagagagaagaGgaGCGGGGCGUCc -3'
miRNA:   3'- gCGCuuUUUUUUg------------UggCGCCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 7793 0.66 0.999701
Target:  5'- uGCGAGAGu--ACACgaUGGGugGCUc -3'
miRNA:   3'- gCGCUUUUuuuUGUGgcGCCCugCGG- -5'
29719 5' -49.8 NC_006273.1 + 8027 0.66 0.999812
Target:  5'- gGCcucGAcGAACGagaCGCGGcGACGCCu -3'
miRNA:   3'- gCGcuuUUuUUUGUg--GCGCC-CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 14591 0.69 0.9936
Target:  5'- aGCcuAGAAAcauguuAGCGCCGUaGGGACGCUu -3'
miRNA:   3'- gCGcuUUUUU------UUGUGGCG-CCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 14611 0.68 0.997449
Target:  5'- uCGCGAGagGAAGAACucguuCCGUGGaGuCGUCu -3'
miRNA:   3'- -GCGCUU--UUUUUUGu----GGCGCC-CuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 20204 0.67 0.998739
Target:  5'- gGCGGucuc-AACgGCCGCGGGgaACGCa -3'
miRNA:   3'- gCGCUuuuuuUUG-UGGCGCCC--UGCGg -5'
29719 5' -49.8 NC_006273.1 + 20209 0.69 0.996473
Target:  5'- aCGCGAGuGAcAACGCaguGCGGcGACGgCa -3'
miRNA:   3'- -GCGCUUuUUuUUGUGg--CGCC-CUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 20330 0.72 0.970275
Target:  5'- aCGCGGGcgucuGAGACAucCCGCGGGAaGCg -3'
miRNA:   3'- -GCGCUUuu---UUUUGU--GGCGCCCUgCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.