miRNA display CGI


Results 21 - 40 of 452 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 5' -49.8 NC_006273.1 + 20379 0.69 0.996473
Target:  5'- cCGCGAccc--GGCGgUGCGGGACuCCg -3'
miRNA:   3'- -GCGCUuuuuuUUGUgGCGCCCUGcGG- -5'
29719 5' -49.8 NC_006273.1 + 20619 0.68 0.997449
Target:  5'- uCGCGGuccgccgguguuGGGAccGCuucCCGCGGGAUGUCu -3'
miRNA:   3'- -GCGCU------------UUUUuuUGu--GGCGCCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 20752 0.66 0.999812
Target:  5'- gCGCGAGAGAAGGgAauGaUGGGA-GCCg -3'
miRNA:   3'- -GCGCUUUUUUUUgUggC-GCCCUgCGG- -5'
29719 5' -49.8 NC_006273.1 + 20910 0.71 0.985561
Target:  5'- aCGUGGuuccucguucugccGGAGCACCGUGGG-UGCCg -3'
miRNA:   3'- -GCGCUuuu-----------UUUUGUGGCGCCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 21654 0.71 0.986066
Target:  5'- gGCGAccGAGAcCACgGCGcuGGugGCCg -3'
miRNA:   3'- gCGCUuuUUUUuGUGgCGC--CCugCGG- -5'
29719 5' -49.8 NC_006273.1 + 21996 0.66 0.999812
Target:  5'- -cCGAAGAucGGGCugcugGCCGCGGGAUcggugGCCc -3'
miRNA:   3'- gcGCUUUUu-UUUG-----UGGCGCCCUG-----CGG- -5'
29719 5' -49.8 NC_006273.1 + 22112 0.83 0.541704
Target:  5'- gGCGGAGGAAAcUGCCGCGGGAgaaGCCu -3'
miRNA:   3'- gCGCUUUUUUUuGUGGCGCCCUg--CGG- -5'
29719 5' -49.8 NC_006273.1 + 22323 0.69 0.996473
Target:  5'- gGCGccAAcGAACGCCGCGacuccGACGUCg -3'
miRNA:   3'- gCGCuuUUuUUUGUGGCGCc----CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 25309 0.69 0.995138
Target:  5'- aGCGucAGAAGACGagcuagaugugagUCGCaGGGACGCg -3'
miRNA:   3'- gCGCuuUUUUUUGU-------------GGCG-CCCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 25368 0.67 0.99914
Target:  5'- gCGUGAGAAAcAugACCGUguugacggGGGcACGCg -3'
miRNA:   3'- -GCGCUUUUUuUugUGGCG--------CCC-UGCGg -5'
29719 5' -49.8 NC_006273.1 + 28028 0.67 0.999295
Target:  5'- aUGCGG-----GAUGCUGCGGcGGCGCg -3'
miRNA:   3'- -GCGCUuuuuuUUGUGGCGCC-CUGCGg -5'
29719 5' -49.8 NC_006273.1 + 30470 0.72 0.967259
Target:  5'- gGCGGAGGAcagcguuuucacGAGCA-CGCGGGcgcgcaGCGCCa -3'
miRNA:   3'- gCGCUUUUU------------UUUGUgGCGCCC------UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 30630 0.68 0.996994
Target:  5'- aGCGAAAAGAAACgAUCGuCGucGCGUCg -3'
miRNA:   3'- gCGCUUUUUUUUG-UGGC-GCccUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 30674 0.66 0.999762
Target:  5'- aGCGGGc----GCGCCuCGGGGCucGCCg -3'
miRNA:   3'- gCGCUUuuuuuUGUGGcGCCCUG--CGG- -5'
29719 5' -49.8 NC_006273.1 + 30807 0.67 0.999295
Target:  5'- aGCGuccGAGGAGACGCUGUaGGGCGaCa -3'
miRNA:   3'- gCGCu--UUUUUUUGUGGCGcCCUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 31378 0.72 0.975702
Target:  5'- gGaCGAAGAGcugcGGCAUCGCGGcACGCCc -3'
miRNA:   3'- gC-GCUUUUUu---UUGUGGCGCCcUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 31563 0.7 0.991583
Target:  5'- aCGUGAGAAaguGAAGCGCuagCGCGGccgcACGCCc -3'
miRNA:   3'- -GCGCUUUU---UUUUGUG---GCGCCc---UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 32261 0.66 0.999535
Target:  5'- gGCGcAGGugGGugGCgCGCGGGuCGCg -3'
miRNA:   3'- gCGC-UUUuuUUugUG-GCGCCCuGCGg -5'
29719 5' -49.8 NC_006273.1 + 32520 0.66 0.999701
Target:  5'- uCGCGuu-GAGGAUAgUCGCGcGGugGCa -3'
miRNA:   3'- -GCGCuuuUUUUUGU-GGCGC-CCugCGg -5'
29719 5' -49.8 NC_006273.1 + 32857 0.69 0.994991
Target:  5'- gCGCGcugcugcguCACCGUGuGACGCCg -3'
miRNA:   3'- -GCGCuuuuuuuu-GUGGCGCcCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.