miRNA display CGI


Results 41 - 60 of 452 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 5' -49.8 NC_006273.1 + 33373 0.71 0.978126
Target:  5'- gCGCGuuau-AAGCACCGUGGGGucauCGaCCg -3'
miRNA:   3'- -GCGCuuuuuUUUGUGGCGCCCU----GC-GG- -5'
29719 5' -49.8 NC_006273.1 + 33403 0.68 0.998188
Target:  5'- gGCGcuGGAcgcGCACCGCcucGGGCGUCg -3'
miRNA:   3'- gCGCuuUUUuu-UGUGGCGc--CCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 33622 0.7 0.987651
Target:  5'- uGCGAcacGGGGAcGCGCCGCaGGAuCGCa -3'
miRNA:   3'- gCGCU---UUUUUuUGUGGCGcCCU-GCGg -5'
29719 5' -49.8 NC_006273.1 + 34015 0.66 0.999535
Target:  5'- gGCGugcuccAAACgggaAUgGUGGGACGCCa -3'
miRNA:   3'- gCGCuuuuu-UUUG----UGgCGCCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 34140 0.66 0.999535
Target:  5'- cCGCGuAGAGGuccuucAACGCCGCuucGGcucGCGCCa -3'
miRNA:   3'- -GCGCuUUUUU------UUGUGGCGc--CC---UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 34187 0.71 0.982431
Target:  5'- gCGUGGAAAAAAacgGCGgCGCGGuGCGUCc -3'
miRNA:   3'- -GCGCUUUUUUU---UGUgGCGCCcUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 34487 0.66 0.999673
Target:  5'- gGCGGcccugu--GCCGCGGGuuGCCc -3'
miRNA:   3'- gCGCUuuuuuuugUGGCGCCCugCGG- -5'
29719 5' -49.8 NC_006273.1 + 34518 0.66 0.999762
Target:  5'- aGCGAAAAu--GCugCGgauCGGGcggcaagggcACGCCu -3'
miRNA:   3'- gCGCUUUUuuuUGugGC---GCCC----------UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 34656 0.66 0.99968
Target:  5'- gGCGAAugu--ACACCaugGCGugcuugggauguuuGGGCGCCg -3'
miRNA:   3'- gCGCUUuuuuuUGUGG---CGC--------------CCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 35200 0.76 0.866432
Target:  5'- gGCGAGAagcAAAAACGCCGUGGGcaACGaaaCCa -3'
miRNA:   3'- gCGCUUU---UUUUUGUGGCGCCC--UGC---GG- -5'
29719 5' -49.8 NC_006273.1 + 35899 0.69 0.995881
Target:  5'- aGCGGcgGccAGCACaGCGGGA-GCCa -3'
miRNA:   3'- gCGCUuuUuuUUGUGgCGCCCUgCGG- -5'
29719 5' -49.8 NC_006273.1 + 36719 0.66 0.999701
Target:  5'- cCGCGAGcgGAGGCGCgcgaGCGGcGGCacagcucgGCCc -3'
miRNA:   3'- -GCGCUUuuUUUUGUGg---CGCC-CUG--------CGG- -5'
29719 5' -49.8 NC_006273.1 + 36752 0.66 0.999535
Target:  5'- gCGCGAGcccgucAUGCCGCuGGGcgaaauugaggGCGCCg -3'
miRNA:   3'- -GCGCUUuuuuu-UGUGGCG-CCC-----------UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 36889 0.68 0.997845
Target:  5'- uGCGccuacguAGAGGcGCACCGCGaGGCGCa -3'
miRNA:   3'- gCGCu------UUUUUuUGUGGCGCcCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 36926 0.67 0.999426
Target:  5'- cCGCGAGuugcuGGC-CUGCGaGGAcacCGCCg -3'
miRNA:   3'- -GCGCUUuuuu-UUGuGGCGC-CCU---GCGG- -5'
29719 5' -49.8 NC_006273.1 + 37265 0.76 0.866432
Target:  5'- aCGaGGAGGAAGACGCCGUGGc-CGCCg -3'
miRNA:   3'- -GCgCUUUUUUUUGUGGCGCCcuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 37408 0.78 0.772698
Target:  5'- cCGCGAcu--GAGCGCCGgGGcGCGCCg -3'
miRNA:   3'- -GCGCUuuuuUUUGUGGCgCCcUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 37639 0.68 0.997845
Target:  5'- aGCGuguGGAGGACGggguggaGCGGGuCGCCg -3'
miRNA:   3'- gCGCuu-UUUUUUGUgg-----CGCCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 38156 0.79 0.712439
Target:  5'- aCGCGGuuuauauACACCgucucggacgGCGGGACGCCg -3'
miRNA:   3'- -GCGCUuuuuuu-UGUGG----------CGCCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 38157 0.67 0.998956
Target:  5'- aCGCGugcGAGAcCugCGCGaGGcccgGCGCCa -3'
miRNA:   3'- -GCGCuuuUUUUuGugGCGC-CC----UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.