miRNA display CGI


Results 61 - 80 of 452 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 5' -49.8 NC_006273.1 + 39196 0.7 0.992646
Target:  5'- aGCaGAAAGAAGagcucggcguACGCCGCcuuGGGCGUCa -3'
miRNA:   3'- gCG-CUUUUUUU----------UGUGGCGc--CCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 40295 0.7 0.992646
Target:  5'- aCGUGAGAAAGuuguCCGCGGGcaauugcauguCGCCc -3'
miRNA:   3'- -GCGCUUUUUUuuguGGCGCCCu----------GCGG- -5'
29719 5' -49.8 NC_006273.1 + 40464 0.77 0.809146
Target:  5'- gGCGcc--AAAACGCCGUcGGACGCCg -3'
miRNA:   3'- gCGCuuuuUUUUGUGGCGcCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 40613 0.67 0.999295
Target:  5'- gCGCGGcuuugcAAucACGCCGCucgacgGGGAuCGCCg -3'
miRNA:   3'- -GCGCUuu----UUuuUGUGGCG------CCCU-GCGG- -5'
29719 5' -49.8 NC_006273.1 + 41485 0.74 0.935146
Target:  5'- cCGCGGugacacAAACAgCGUcucGGGACGCCg -3'
miRNA:   3'- -GCGCUuuuu--UUUGUgGCG---CCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 41515 0.67 0.998956
Target:  5'- gCGUGAGGAu-GGCAgCGCcGG-CGCCa -3'
miRNA:   3'- -GCGCUUUUuuUUGUgGCGcCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 41805 0.74 0.939973
Target:  5'- uGCGggGAaacGAGACugaaaGCCGCGuGACGCUg -3'
miRNA:   3'- gCGCuuUU---UUUUG-----UGGCGCcCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 41901 0.67 0.999426
Target:  5'- cCGCuGAAAAugcuGGAACACCGCcaccacuaGcGGCGCCc -3'
miRNA:   3'- -GCG-CUUUU----UUUUGUGGCGc-------C-CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 42184 0.68 0.997845
Target:  5'- aGCGGc-AAGGGCGCCGCuaguGGugGCg -3'
miRNA:   3'- gCGCUuuUUUUUGUGGCGc---CCugCGg -5'
29719 5' -49.8 NC_006273.1 + 43437 0.68 0.997845
Target:  5'- aGCGGAGGcgGAUA-CGCGguuuucacccGGGCGCCg -3'
miRNA:   3'- gCGCUUUUuuUUGUgGCGC----------CCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 43607 0.69 0.994452
Target:  5'- uCGUGGAcGAAuAGCagACCGCGGG-CGCa -3'
miRNA:   3'- -GCGCUU-UUUuUUG--UGGCGCCCuGCGg -5'
29719 5' -49.8 NC_006273.1 + 44097 0.78 0.782022
Target:  5'- uCGUGGAAAGugcugcuGACGCUaguGUGGGGCGCCg -3'
miRNA:   3'- -GCGCUUUUUu------UUGUGG---CGCCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 45235 0.7 0.991583
Target:  5'- cCGCucGGAGAAAACAacgucgaCGgGGGACGUCg -3'
miRNA:   3'- -GCGc-UUUUUUUUGUg------GCgCCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 45292 0.7 0.992646
Target:  5'- uGCGAGcAGGccgcCGCCGUGGGG-GCCg -3'
miRNA:   3'- gCGCUUuUUUuu--GUGGCGCCCUgCGG- -5'
29719 5' -49.8 NC_006273.1 + 45560 0.7 0.992646
Target:  5'- gCGCGAcGAGuugaccAAACGCUGCGGcgaaaaaucGGCGCUg -3'
miRNA:   3'- -GCGCUuUUU------UUUGUGGCGCC---------CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 46257 0.67 0.998739
Target:  5'- uGCGggGAcgacGGGCGuuGCGGGGCuUCu -3'
miRNA:   3'- gCGCuuUUu---UUUGUggCGCCCUGcGG- -5'
29719 5' -49.8 NC_006273.1 + 47801 0.68 0.998485
Target:  5'- --aGAAAAAGAgcucgccuucgcGCGCCGUGGGAUcgGCUu -3'
miRNA:   3'- gcgCUUUUUUU------------UGUGGCGCCCUG--CGG- -5'
29719 5' -49.8 NC_006273.1 + 48079 0.7 0.992646
Target:  5'- cCGCGGAccuGGAGCAgCCGCcccGGcaacGACGCCg -3'
miRNA:   3'- -GCGCUUuu-UUUUGU-GGCG---CC----CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 48267 0.77 0.826437
Target:  5'- aGCGAcgucGAAGAC-CCGCGGGACgaucugGCCg -3'
miRNA:   3'- gCGCUuu--UUUUUGuGGCGCCCUG------CGG- -5'
29719 5' -49.8 NC_006273.1 + 48574 0.69 0.994452
Target:  5'- gGUGAGGGGcgGCauGCCGuUGGcGGCGCCg -3'
miRNA:   3'- gCGCUUUUUuuUG--UGGC-GCC-CUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.