miRNA display CGI


Results 81 - 100 of 452 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 5' -49.8 NC_006273.1 + 49602 0.66 0.999626
Target:  5'- cCGCaGAAAAuccuuCAUgGUGGG-CGCCa -3'
miRNA:   3'- -GCG-CUUUUuuuu-GUGgCGCCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 51992 0.67 0.999426
Target:  5'- cCGUGccAGAAcuGCGCCauGCuGGGCGCCa -3'
miRNA:   3'- -GCGCu-UUUUuuUGUGG--CGcCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 52988 0.66 0.999535
Target:  5'- aGCGuaacGGAGGACACagaGCGGGAgGaCa -3'
miRNA:   3'- gCGCuu--UUUUUUGUGg--CGCCCUgCgG- -5'
29719 5' -49.8 NC_006273.1 + 53394 0.69 0.996473
Target:  5'- uGCGAAgauGAAAAACAUCuuaagaaacCGGGuCGCCu -3'
miRNA:   3'- gCGCUU---UUUUUUGUGGc--------GCCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 55375 0.69 0.9936
Target:  5'- uGCucGAAGGugaGCCGCGG-ACGCCg -3'
miRNA:   3'- gCGcuUUUUUuugUGGCGCCcUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 55903 0.66 0.999658
Target:  5'- gCGCGAAGAAcuGGGCuauguccgcuucgagACCgGCGGcGACGUg -3'
miRNA:   3'- -GCGCUUUUU--UUUG---------------UGG-CGCC-CUGCGg -5'
29719 5' -49.8 NC_006273.1 + 56335 0.67 0.998956
Target:  5'- aCGaCGAgauGAAGGAACGCaCGCuggaGGACGCg -3'
miRNA:   3'- -GC-GCU---UUUUUUUGUG-GCGc---CCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 56385 0.7 0.993041
Target:  5'- gGCGuuuucuc-CAUCGCGGGaccGCGCCg -3'
miRNA:   3'- gCGCuuuuuuuuGUGGCGCCC---UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 56489 0.68 0.996994
Target:  5'- gCGCGGAuc-GGACACUuuagGCGGcGcaGCGCCa -3'
miRNA:   3'- -GCGCUUuuuUUUGUGG----CGCC-C--UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 56638 0.79 0.753683
Target:  5'- cCGCGAugGAGAAAACGCCgGCGGaGACGaCg -3'
miRNA:   3'- -GCGCU--UUUUUUUGUGG-CGCC-CUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 56811 0.67 0.999295
Target:  5'- gGCGGAGGAGGAgGCgGCGGuuugGAuCGCa -3'
miRNA:   3'- gCGCUUUUUUUUgUGgCGCC----CU-GCGg -5'
29719 5' -49.8 NC_006273.1 + 56842 0.7 0.987651
Target:  5'- aGCGAAGAGAGGCuGCCGCuaccacCGCCg -3'
miRNA:   3'- gCGCUUUUUUUUG-UGGCGcccu--GCGG- -5'
29719 5' -49.8 NC_006273.1 + 56934 0.68 0.997845
Target:  5'- aCGCGGAAAAuGAGCAgCgGUGGcGGCGgCg -3'
miRNA:   3'- -GCGCUUUUU-UUUGU-GgCGCC-CUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 56976 0.74 0.919229
Target:  5'- gGCGgcAAGAAGCacgACCGCGGuGGCGgCg -3'
miRNA:   3'- gCGCuuUUUUUUG---UGGCGCC-CUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 57814 0.72 0.975702
Target:  5'- aCGaCGAccGGGAACGCUGCGaaGACGCCc -3'
miRNA:   3'- -GC-GCUuuUUUUUGUGGCGCc-CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 58596 0.69 0.9936
Target:  5'- gCGCGcuGGGAAGCGCUGC---GCGCCg -3'
miRNA:   3'- -GCGCuuUUUUUUGUGGCGcccUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 59517 0.67 0.998956
Target:  5'- aCGCGAGAAGGAgguGCAucgacCCGUGGuACGUg -3'
miRNA:   3'- -GCGCUUUUUUU---UGU-----GGCGCCcUGCGg -5'
29719 5' -49.8 NC_006273.1 + 60242 0.71 0.982431
Target:  5'- gCGCGAGAu-GGACACCGUGucGCGgCa -3'
miRNA:   3'- -GCGCUUUuuUUUGUGGCGCccUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 60248 0.78 0.800254
Target:  5'- cCGCGAcu--GGGCACgGCGGGAcCGCUg -3'
miRNA:   3'- -GCGCUuuuuUUUGUGgCGCCCU-GCGG- -5'
29719 5' -49.8 NC_006273.1 + 60292 0.68 0.998485
Target:  5'- gGCGuacAGGAGcCGgCGCGGGAgcUGCCg -3'
miRNA:   3'- gCGCuu-UUUUUuGUgGCGCCCU--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.