miRNA display CGI


Results 1 - 20 of 452 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 5' -49.8 NC_006273.1 + 234959 0.67 0.99914
Target:  5'- gGCGAAuAAAAGCgACgUGCGGcGCGCa -3'
miRNA:   3'- gCGCUUuUUUUUG-UG-GCGCCcUGCGg -5'
29719 5' -49.8 NC_006273.1 + 234622 0.72 0.975702
Target:  5'- uGCGAGugcu-GCGCCuaCGGcGACGCCg -3'
miRNA:   3'- gCGCUUuuuuuUGUGGc-GCC-CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 234588 0.74 0.933149
Target:  5'- gGCGuccaccggguAGAACcCCGCGGGcCGCCg -3'
miRNA:   3'- gCGCuuuu------UUUUGuGGCGCCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 234328 0.71 0.977656
Target:  5'- cCGCGggGuucuacccgguGGACGCCGUGGcccGGCGUCg -3'
miRNA:   3'- -GCGCuuUuu---------UUUGUGGCGCC---CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 234324 0.67 0.999295
Target:  5'- gCGCGGGu---GACGCCGCGca--GCCa -3'
miRNA:   3'- -GCGCUUuuuuUUGUGGCGCccugCGG- -5'
29719 5' -49.8 NC_006273.1 + 234275 0.8 0.695363
Target:  5'- uGCGucagcuguCGCCGCGGGACGCg -3'
miRNA:   3'- gCGCuuuuuuuuGUGGCGCCCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 234157 0.66 0.999535
Target:  5'- gCGCGGcccgugcuguuGGccAGAAACGCCGCGcgccacacGGCGCCc -3'
miRNA:   3'- -GCGCU-----------UU--UUUUUGUGGCGCc-------CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 233711 0.68 0.997449
Target:  5'- gCGCGGugcu--GC-CCGCGcGGugGCUg -3'
miRNA:   3'- -GCGCUuuuuuuUGuGGCGC-CCugCGG- -5'
29719 5' -49.8 NC_006273.1 + 233642 0.71 0.984328
Target:  5'- gGCGAGcggcacggagacGGAGGcCGCCgGCGGGgacGCGCCg -3'
miRNA:   3'- gCGCUU------------UUUUUuGUGG-CGCCC---UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 233598 0.66 0.999634
Target:  5'- gCGCGAuggcaggaGCCGUGGGGucUGCUg -3'
miRNA:   3'- -GCGCUuuuuuuugUGGCGCCCU--GCGG- -5'
29719 5' -49.8 NC_006273.1 + 233553 0.67 0.998739
Target:  5'- aGcCGuacGGAGGCGCCgGCGGGAgCGCg -3'
miRNA:   3'- gC-GCuuuUUUUUGUGG-CGCCCU-GCGg -5'
29719 5' -49.8 NC_006273.1 + 233471 0.66 0.999762
Target:  5'- gGCGGcagc-GGCAgCaGCGGcGGCGCCg -3'
miRNA:   3'- gCGCUuuuuuUUGUgG-CGCC-CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 233460 0.7 0.989094
Target:  5'- gCGCGGGc---AGCACCGCGcccaGCGCCa -3'
miRNA:   3'- -GCGCUUuuuuUUGUGGCGCcc--UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 233195 0.76 0.858831
Target:  5'- cCGCGAGcaguGGGAGCgGCCGCgcuGGGACGCg -3'
miRNA:   3'- -GCGCUUu---UUUUUG-UGGCG---CCCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 233149 0.67 0.99883
Target:  5'- gCGCGGcacgguccccGACGCCGCcGGAccCGCCa -3'
miRNA:   3'- -GCGCUuuuuu-----UUGUGGCGcCCU--GCGG- -5'
29719 5' -49.8 NC_006273.1 + 231049 0.66 0.999535
Target:  5'- --aGAGGAGGAACACCucuucuuCGGGACGauaCa -3'
miRNA:   3'- gcgCUUUUUUUUGUGGc------GCCCUGCg--G- -5'
29719 5' -49.8 NC_006273.1 + 230305 0.66 0.999762
Target:  5'- cCGCGGuccu-AGCACgucaGUGGuGACGCUg -3'
miRNA:   3'- -GCGCUuuuuuUUGUGg---CGCC-CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 229844 0.71 0.986066
Target:  5'- gGCGAGAGGAcgaucuuCGCaCGCGGGcugaGCCg -3'
miRNA:   3'- gCGCUUUUUUuu-----GUG-GCGCCCug--CGG- -5'
29719 5' -49.8 NC_006273.1 + 229616 0.67 0.99914
Target:  5'- aCGCGuuAu---ACGCCGaguGGGACGgCa -3'
miRNA:   3'- -GCGCuuUuuuuUGUGGCg--CCCUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 228685 0.72 0.964032
Target:  5'- uCGCGuuGAcacuGGAGCGCCGCGGucucGAUGCg -3'
miRNA:   3'- -GCGCuuUU----UUUUGUGGCGCC----CUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.