miRNA display CGI


Results 21 - 40 of 452 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 5' -49.8 NC_006273.1 + 228522 0.67 0.999205
Target:  5'- aGCGcu-GAGGACGCCguauguagaagacguGCGGGuCGCg -3'
miRNA:   3'- gCGCuuuUUUUUGUGG---------------CGCCCuGCGg -5'
29719 5' -49.8 NC_006273.1 + 228192 0.66 0.999618
Target:  5'- uGCGAAcgucaccGGAGAccguccACGCCGuUGGGAaagaaCGCCg -3'
miRNA:   3'- gCGCUU-------UUUUU------UGUGGC-GCCCU-----GCGG- -5'
29719 5' -49.8 NC_006273.1 + 227543 0.66 0.999701
Target:  5'- aCGCGucgccAGAAAAGCAgCG-GGuGACGCa -3'
miRNA:   3'- -GCGCu----UUUUUUUGUgGCgCC-CUGCGg -5'
29719 5' -49.8 NC_006273.1 + 226426 0.67 0.999123
Target:  5'- aCGCGAAAAGcucaugcuguGGuaccaggauACAUCGCGGGAaaagaguCGCUg -3'
miRNA:   3'- -GCGCUUUUU----------UU---------UGUGGCGCCCU-------GCGG- -5'
29719 5' -49.8 NC_006273.1 + 223244 0.67 0.998739
Target:  5'- gGUGguAGAGA--ACUGCaGGACGCCc -3'
miRNA:   3'- gCGCuuUUUUUugUGGCGcCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 222781 0.73 0.954617
Target:  5'- gGCGuuuucacuACGCCGUGGacGACGCCg -3'
miRNA:   3'- gCGCuuuuuuu-UGUGGCGCC--CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 222680 0.7 0.992646
Target:  5'- gGCGu-GAAAGACGCCGgaGGGuagcgacuCGCCc -3'
miRNA:   3'- gCGCuuUUUUUUGUGGCg-CCCu-------GCGG- -5'
29719 5' -49.8 NC_006273.1 + 221822 0.7 0.992646
Target:  5'- gGCGGGu--GAGCACCcgGCGuuGCGCCg -3'
miRNA:   3'- gCGCUUuuuUUUGUGG--CGCccUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 221633 0.74 0.93008
Target:  5'- gCGCGggGu--GGCGgaGCGGGgaGCGCCg -3'
miRNA:   3'- -GCGCuuUuuuUUGUggCGCCC--UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 221433 0.67 0.999281
Target:  5'- aCGCGccuguGGAGGGCcaaucggACCGCGGGA-GCUc -3'
miRNA:   3'- -GCGCuu---UUUUUUG-------UGGCGCCCUgCGG- -5'
29719 5' -49.8 NC_006273.1 + 221045 0.72 0.970275
Target:  5'- cCGCGAGccgcuGACGCCGuUGGGAuaCGCUg -3'
miRNA:   3'- -GCGCUUuuuu-UUGUGGC-GCCCU--GCGG- -5'
29719 5' -49.8 NC_006273.1 + 220517 0.7 0.991583
Target:  5'- gGCGuGAcgGGACGuCCGCggccGGGACGCa -3'
miRNA:   3'- gCGCuUUuuUUUGU-GGCG----CCCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 220249 0.68 0.997808
Target:  5'- aGCGGGAcauucucuucaacGAAGACGCCGCGu--UGCCc -3'
miRNA:   3'- gCGCUUU-------------UUUUUGUGGCGCccuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 219950 0.67 0.998739
Target:  5'- aCGCGc--GAGGGCGCagaGCGGGugauuacCGCCc -3'
miRNA:   3'- -GCGCuuuUUUUUGUGg--CGCCCu------GCGG- -5'
29719 5' -49.8 NC_006273.1 + 218996 0.69 0.995881
Target:  5'- cCGCuGGuaccugcuGGGCGCCGUGGGcuccuaccGCGCCg -3'
miRNA:   3'- -GCG-CUuuuu----UUUGUGGCGCCC--------UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 218296 0.73 0.953034
Target:  5'- cCGCGAAGu----CGCCGCGGaccacgcGCGCCu -3'
miRNA:   3'- -GCGCUUUuuuuuGUGGCGCCc------UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 217792 0.67 0.999426
Target:  5'- gCGCGAc---GAGCGCUGCGaaGAUGCUa -3'
miRNA:   3'- -GCGCUuuuuUUUGUGGCGCc-CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 217689 0.66 0.999701
Target:  5'- uCGCGGcu--GGugGCCcaggggGUGGGACGCg -3'
miRNA:   3'- -GCGCUuuuuUUugUGG------CGCCCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 215692 0.7 0.987651
Target:  5'- cCGCGGAGc--GACAUgGCGGcaACGCCg -3'
miRNA:   3'- -GCGCUUUuuuUUGUGgCGCCc-UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 214960 0.72 0.970275
Target:  5'- cCGCGGAcacgucgauuAGGAGACgaACUGgGGcGACGCCg -3'
miRNA:   3'- -GCGCUU----------UUUUUUG--UGGCgCC-CUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.