miRNA display CGI


Results 41 - 60 of 452 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 5' -49.8 NC_006273.1 + 213669 0.71 0.982431
Target:  5'- gGCGAGAAGAGccGCGCCgacaaaggccuGCGGcGACGgCu -3'
miRNA:   3'- gCGCUUUUUUU--UGUGG-----------CGCC-CUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 213515 0.69 0.996473
Target:  5'- -cCGAGAAAGAACgggGCCGCGGccCGCa -3'
miRNA:   3'- gcGCUUUUUUUUG---UGGCGCCcuGCGg -5'
29719 5' -49.8 NC_006273.1 + 212666 0.68 0.998485
Target:  5'- aCGCc--GAGAAACACgGCGG-ACGCa -3'
miRNA:   3'- -GCGcuuUUUUUUGUGgCGCCcUGCGg -5'
29719 5' -49.8 NC_006273.1 + 212047 0.66 0.999535
Target:  5'- gCGCGAGGGu---CGCgGgggugGGGGCGCCc -3'
miRNA:   3'- -GCGCUUUUuuuuGUGgCg----CCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 211282 0.67 0.998956
Target:  5'- -cCGAAAu-GGAgGCCGCGuuGGugGCCc -3'
miRNA:   3'- gcGCUUUuuUUUgUGGCGC--CCugCGG- -5'
29719 5' -49.8 NC_006273.1 + 211181 0.66 0.999626
Target:  5'- gGUGGAGAcggccGGCGCgGCGGGugGg- -3'
miRNA:   3'- gCGCUUUUuu---UUGUGgCGCCCugCgg -5'
29719 5' -49.8 NC_006273.1 + 210784 0.77 0.846244
Target:  5'- gCGCGGAggccacaggcaccagGAGGAGCACCuCGGG-CGCCc -3'
miRNA:   3'- -GCGCUU---------------UUUUUUGUGGcGCCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 210712 0.67 0.99914
Target:  5'- -aCGGAcGAcgGCAgCGCGGG-UGCCg -3'
miRNA:   3'- gcGCUUuUUuuUGUgGCGCCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 209978 0.66 0.999535
Target:  5'- aCGCGGcaacagucGAcccAAGCcagACUGCGGGuCGCCa -3'
miRNA:   3'- -GCGCU--------UUuu-UUUG---UGGCGCCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 209872 0.7 0.992646
Target:  5'- aCGgGAAugguGAAAccACGUCGCGGG-CGCCg -3'
miRNA:   3'- -GCgCUUu---UUUU--UGUGGCGCCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 209532 0.75 0.894667
Target:  5'- uGCGGAu----ACGCCGCcGGGCGCUg -3'
miRNA:   3'- gCGCUUuuuuuUGUGGCGcCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 208789 0.71 0.978126
Target:  5'- -aUGAGGcuGGAAACGCCGauGGGCGCUg -3'
miRNA:   3'- gcGCUUU--UUUUUGUGGCgcCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 205639 0.66 0.999701
Target:  5'- uCGUGGAAG---GCACCGCGacagcuaccGaGGCGCUg -3'
miRNA:   3'- -GCGCUUUUuuuUGUGGCGC---------C-CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 201890 0.72 0.973088
Target:  5'- aCGCGAAGAccgcuCACCGgGGGuCGgCa -3'
miRNA:   3'- -GCGCUUUUuuuu-GUGGCgCCCuGCgG- -5'
29719 5' -49.8 NC_006273.1 + 199377 0.67 0.998739
Target:  5'- uCGUGugcuAAGACGCC-CGGGAuCGCg -3'
miRNA:   3'- -GCGCuuuuUUUUGUGGcGCCCU-GCGg -5'
29719 5' -49.8 NC_006273.1 + 199000 0.66 0.999701
Target:  5'- uGCGGGAAcuGGCcugGCgGCGGGuaGCCg -3'
miRNA:   3'- gCGCUUUUuuUUG---UGgCGCCCugCGG- -5'
29719 5' -49.8 NC_006273.1 + 198906 0.68 0.998188
Target:  5'- uGCGucGGAGcucagaccgGGCuCCgGCGGGugGCCu -3'
miRNA:   3'- gCGCuuUUUU---------UUGuGG-CGCCCugCGG- -5'
29719 5' -49.8 NC_006273.1 + 198780 0.69 0.996473
Target:  5'- aCGcCGAccGAGAGGuCACCGagcccGGACGCCa -3'
miRNA:   3'- -GC-GCU--UUUUUUuGUGGCgc---CCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 198511 0.7 0.991583
Target:  5'- cCGCGGAGGugcuGGCgGCCGUGGccuGugGCCc -3'
miRNA:   3'- -GCGCUUUUuu--UUG-UGGCGCC---CugCGG- -5'
29719 5' -49.8 NC_006273.1 + 197390 0.67 0.99883
Target:  5'- gCGCGGcacgguccccGACGCCGCcGGAccCGCCa -3'
miRNA:   3'- -GCGCUuuuuu-----UUGUGGCGcCCU--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.