Results 61 - 80 of 452 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29719 | 5' | -49.8 | NC_006273.1 | + | 197344 | 0.76 | 0.858831 |
Target: 5'- cCGCGAGcaguGGGAGCgGCCGCgcuGGGACGCg -3' miRNA: 3'- -GCGCUUu---UUUUUG-UGGCG---CCCUGCGg -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 197079 | 0.7 | 0.989094 |
Target: 5'- gCGCGGGc---AGCACCGCGcccaGCGCCa -3' miRNA: 3'- -GCGCUUuuuuUUGUGGCGCcc--UGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 197068 | 0.66 | 0.999762 |
Target: 5'- gGCGGcagc-GGCAgCaGCGGcGGCGCCg -3' miRNA: 3'- gCGCUuuuuuUUGUgG-CGCC-CUGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 196986 | 0.67 | 0.998739 |
Target: 5'- aGcCGuacGGAGGCGCCgGCGGGAgCGCg -3' miRNA: 3'- gC-GCuuuUUUUUGUGG-CGCCCU-GCGg -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 196941 | 0.66 | 0.999634 |
Target: 5'- gCGCGAuggcaggaGCCGUGGGGucUGCUg -3' miRNA: 3'- -GCGCUuuuuuuugUGGCGCCCU--GCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 196897 | 0.71 | 0.984328 |
Target: 5'- gGCGAGcggcacggagacGGAGGcCGCCgGCGGGgacGCGCCg -3' miRNA: 3'- gCGCUU------------UUUUUuGUGG-CGCCC---UGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 196827 | 0.68 | 0.997449 |
Target: 5'- gCGCGGugcu--GC-CCGCGcGGugGCUg -3' miRNA: 3'- -GCGCUuuuuuuUGuGGCGC-CCugCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 196382 | 0.66 | 0.999535 |
Target: 5'- gCGCGGcccgugcuguuGGccAGAAACGCCGCGcgccacacGGCGCCc -3' miRNA: 3'- -GCGCU-----------UU--UUUUUGUGGCGCc-------CUGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 196264 | 0.8 | 0.695363 |
Target: 5'- uGCGucagcuguCGCCGCGGGACGCg -3' miRNA: 3'- gCGCuuuuuuuuGUGGCGCCCUGCGg -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 196215 | 0.67 | 0.999295 |
Target: 5'- gCGCGGGu---GACGCCGCGca--GCCa -3' miRNA: 3'- -GCGCUUuuuuUUGUGGCGCccugCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 196211 | 0.71 | 0.977656 |
Target: 5'- cCGCGggGuucuacccgguGGACGCCGUGGcccGGCGUCg -3' miRNA: 3'- -GCGCuuUuu---------UUUGUGGCGCC---CUGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 195951 | 0.74 | 0.933149 |
Target: 5'- gGCGuccaccggguAGAACcCCGCGGGcCGCCg -3' miRNA: 3'- gCGCuuuu------UUUUGuGGCGCCCuGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 195917 | 0.72 | 0.975702 |
Target: 5'- uGCGAGugcu-GCGCCuaCGGcGACGCCg -3' miRNA: 3'- gCGCUUuuuuuUGUGGc-GCC-CUGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 195580 | 0.67 | 0.99914 |
Target: 5'- gGCGAAuAAAAGCgACgUGCGGcGCGCa -3' miRNA: 3'- gCGCUUuUUUUUG-UG-GCGCCcUGCGg -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 194883 | 0.69 | 0.996473 |
Target: 5'- uCGCGGAcc--AGCGCCG-GGGACGg- -3' miRNA: 3'- -GCGCUUuuuuUUGUGGCgCCCUGCgg -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 194824 | 0.69 | 0.9936 |
Target: 5'- gCGCGc-AGAAAGCGCCGUGGacagcaaGCCg -3' miRNA: 3'- -GCGCuuUUUUUUGUGGCGCCcug----CGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 194643 | 1.14 | 0.009756 |
Target: 5'- cCGCGAAAAAAAACACCGCGGGACGCCa -3' miRNA: 3'- -GCGCUUUUUUUUGUGGCGCCCUGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 194618 | 0.75 | 0.894667 |
Target: 5'- uGCGggGAcGGGGCGUCGCGGGAUGgCg -3' miRNA: 3'- gCGCuuUU-UUUUGUGGCGCCCUGCgG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 194517 | 0.66 | 0.999626 |
Target: 5'- gGCGggGAcgGGgaGuuGCGGGAUGgCg -3' miRNA: 3'- gCGCuuUUuuUUg-UggCGCCCUGCgG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 193906 | 0.69 | 0.995209 |
Target: 5'- uGCGAGGAAGAAagcgccguguugugaGCagacgacguuggaUGCGGGACGUCg -3' miRNA: 3'- gCGCUUUUUUUUg--------------UG-------------GCGCCCUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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