miRNA display CGI


Results 1 - 20 of 452 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 5' -49.8 NC_006273.1 + 99662 0.76 0.866432
Target:  5'- gGUGAcuccGGACACCGgcgaGGGGCGCCg -3'
miRNA:   3'- gCGCUuuuuUUUGUGGCg---CCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 143839 0.77 0.81701
Target:  5'- gGCGggGAAAAuacugagGCGCCGCcaucaucauguGGGGCGUCu -3'
miRNA:   3'- gCGCuuUUUUU-------UGUGGCG-----------CCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 48267 0.77 0.826437
Target:  5'- aGCGAcgucGAAGAC-CCGCGGGACgaucugGCCg -3'
miRNA:   3'- gCGCUuu--UUUUUGuGGCGCCCUG------CGG- -5'
29719 5' -49.8 NC_006273.1 + 64156 0.77 0.826437
Target:  5'- uCGCGAGAAcuuGGAACGCCGCGG--CGCa -3'
miRNA:   3'- -GCGCUUUU---UUUUGUGGCGCCcuGCGg -5'
29719 5' -49.8 NC_006273.1 + 71826 0.77 0.826437
Target:  5'- uGCGAAGuGAGACGCaggagaCGCGGGAccgcaCGCCg -3'
miRNA:   3'- gCGCUUUuUUUUGUG------GCGCCCU-----GCGG- -5'
29719 5' -49.8 NC_006273.1 + 210784 0.77 0.846244
Target:  5'- gCGCGGAggccacaggcaccagGAGGAGCACCuCGGG-CGCCc -3'
miRNA:   3'- -GCGCUU---------------UUUUUUGUGGcGCCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 190066 0.76 0.851025
Target:  5'- gGCGggGGGacGAACACCGUcGG-CGCCg -3'
miRNA:   3'- gCGCuuUUU--UUUGUGGCGcCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 197344 0.76 0.858831
Target:  5'- cCGCGAGcaguGGGAGCgGCCGCgcuGGGACGCg -3'
miRNA:   3'- -GCGCUUu---UUUUUG-UGGCG---CCCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 37265 0.76 0.866432
Target:  5'- aCGaGGAGGAAGACGCCGUGGc-CGCCg -3'
miRNA:   3'- -GCgCUUUUUUUUGUGGCGCCcuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 60248 0.78 0.800254
Target:  5'- cCGCGAcu--GGGCACgGCGGGAcCGCUg -3'
miRNA:   3'- -GCGCUuuuuUUUGUGgCGCCCU-GCGG- -5'
29719 5' -49.8 NC_006273.1 + 151719 0.78 0.800254
Target:  5'- aGCGGAcgGAAGGGCGCCGCGucgcGCGCCu -3'
miRNA:   3'- gCGCUU--UUUUUUGUGGCGCcc--UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 44097 0.78 0.782022
Target:  5'- uCGUGGAAAGugcugcuGACGCUaguGUGGGGCGCCg -3'
miRNA:   3'- -GCGCUUUUUu------UUGUGG---CGCCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 22112 0.83 0.541704
Target:  5'- gGCGGAGGAAAcUGCCGCGGGAgaaGCCu -3'
miRNA:   3'- gCGCUUUUUUUuGUGGCGCCCUg--CGG- -5'
29719 5' -49.8 NC_006273.1 + 196264 0.8 0.695363
Target:  5'- uGCGucagcuguCGCCGCGGGACGCg -3'
miRNA:   3'- gCGCuuuuuuuuGUGGCGCCCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 38156 0.79 0.712439
Target:  5'- aCGCGGuuuauauACACCgucucggacgGCGGGACGCCg -3'
miRNA:   3'- -GCGCUuuuuuu-UGUGG----------CGCCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 147637 0.79 0.714436
Target:  5'- gGUGAAAAAAGACcCCGCGGGccuuCGCg -3'
miRNA:   3'- gCGCUUUUUUUUGuGGCGCCCu---GCGg -5'
29719 5' -49.8 NC_006273.1 + 145059 0.78 0.763249
Target:  5'- aCGCGAGucucGGCcuaGCCGCGGGcgACGCCg -3'
miRNA:   3'- -GCGCUUuuuuUUG---UGGCGCCC--UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 71728 0.78 0.770818
Target:  5'- gCGCGcagccucGACACaGCGGGGCGCCg -3'
miRNA:   3'- -GCGCuuuuuu-UUGUGgCGCCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 93934 0.78 0.772698
Target:  5'- gCGCGGGccAGGAC-CCGCGGGaggcGCGCCc -3'
miRNA:   3'- -GCGCUUuuUUUUGuGGCGCCC----UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 37408 0.78 0.772698
Target:  5'- cCGCGAcu--GAGCGCCGgGGcGCGCCg -3'
miRNA:   3'- -GCGCUuuuuUUUGUGGCgCCcUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.