Results 21 - 40 of 452 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29719 | 5' | -49.8 | NC_006273.1 | + | 99662 | 0.76 | 0.866432 |
Target: 5'- gGUGAcuccGGACACCGgcgaGGGGCGCCg -3' miRNA: 3'- gCGCUuuuuUUUGUGGCg---CCCUGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 37265 | 0.76 | 0.866432 |
Target: 5'- aCGaGGAGGAAGACGCCGUGGc-CGCCg -3' miRNA: 3'- -GCgCUUUUUUUUGUGGCGCCcuGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 37408 | 0.78 | 0.772698 |
Target: 5'- cCGCGAcu--GAGCGCCGgGGcGCGCCg -3' miRNA: 3'- -GCGCUuuuuUUUGUGGCgCCcUGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 93934 | 0.78 | 0.772698 |
Target: 5'- gCGCGGGccAGGAC-CCGCGGGaggcGCGCCc -3' miRNA: 3'- -GCGCUUuuUUUUGuGGCGCCC----UGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 71728 | 0.78 | 0.770818 |
Target: 5'- gCGCGcagccucGACACaGCGGGGCGCCg -3' miRNA: 3'- -GCGCuuuuuu-UUGUGgCGCCCUGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 145059 | 0.78 | 0.763249 |
Target: 5'- aCGCGAGucucGGCcuaGCCGCGGGcgACGCCg -3' miRNA: 3'- -GCGCUUuuuuUUG---UGGCGCCC--UGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 147637 | 0.79 | 0.714436 |
Target: 5'- gGUGAAAAAAGACcCCGCGGGccuuCGCg -3' miRNA: 3'- gCGCUUUUUUUUGuGGCGCCCu---GCGg -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 38156 | 0.79 | 0.712439 |
Target: 5'- aCGCGGuuuauauACACCgucucggacgGCGGGACGCCg -3' miRNA: 3'- -GCGCUuuuuuu-UGUGG----------CGCCCUGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 196264 | 0.8 | 0.695363 |
Target: 5'- uGCGucagcuguCGCCGCGGGACGCg -3' miRNA: 3'- gCGCuuuuuuuuGUGGCGCCCUGCGg -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 22112 | 0.83 | 0.541704 |
Target: 5'- gGCGGAGGAAAcUGCCGCGGGAgaaGCCu -3' miRNA: 3'- gCGCUUUUUUUuGUGGCGCCCUg--CGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 44097 | 0.78 | 0.782022 |
Target: 5'- uCGUGGAAAGugcugcuGACGCUaguGUGGGGCGCCg -3' miRNA: 3'- -GCGCUUUUUu------UUGUGG---CGCCCUGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 151719 | 0.78 | 0.800254 |
Target: 5'- aGCGGAcgGAAGGGCGCCGCGucgcGCGCCu -3' miRNA: 3'- gCGCUU--UUUUUUGUGGCGCcc--UGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 197344 | 0.76 | 0.858831 |
Target: 5'- cCGCGAGcaguGGGAGCgGCCGCgcuGGGACGCg -3' miRNA: 3'- -GCGCUUu---UUUUUG-UGGCG---CCCUGCGg -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 190066 | 0.76 | 0.851025 |
Target: 5'- gGCGggGGGacGAACACCGUcGG-CGCCg -3' miRNA: 3'- gCGCuuUUU--UUUGUGGCGcCCuGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 210784 | 0.77 | 0.846244 |
Target: 5'- gCGCGGAggccacaggcaccagGAGGAGCACCuCGGG-CGCCc -3' miRNA: 3'- -GCGCUU---------------UUUUUUGUGGcGCCCuGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 71826 | 0.77 | 0.826437 |
Target: 5'- uGCGAAGuGAGACGCaggagaCGCGGGAccgcaCGCCg -3' miRNA: 3'- gCGCUUUuUUUUGUG------GCGCCCU-----GCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 64156 | 0.77 | 0.826437 |
Target: 5'- uCGCGAGAAcuuGGAACGCCGCGG--CGCa -3' miRNA: 3'- -GCGCUUUU---UUUUGUGGCGCCcuGCGg -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 48267 | 0.77 | 0.826437 |
Target: 5'- aGCGAcgucGAAGAC-CCGCGGGACgaucugGCCg -3' miRNA: 3'- gCGCUuu--UUUUUGuGGCGCCCUG------CGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 143839 | 0.77 | 0.81701 |
Target: 5'- gGCGggGAAAAuacugagGCGCCGCcaucaucauguGGGGCGUCu -3' miRNA: 3'- gCGCuuUUUUU-------UGUGGCG-----------CCCUGCGG- -5' |
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29719 | 5' | -49.8 | NC_006273.1 | + | 60248 | 0.78 | 0.800254 |
Target: 5'- cCGCGAcu--GGGCACgGCGGGAcCGCUg -3' miRNA: 3'- -GCGCUuuuuUUUGUGgCGCCCU-GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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