miRNA display CGI


Results 81 - 100 of 452 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 5' -49.8 NC_006273.1 + 78840 0.72 0.964032
Target:  5'- aGCGcGAGAGGACGuCaCGCGuGACGCCc -3'
miRNA:   3'- gCGCuUUUUUUUGU-G-GCGCcCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 1706 0.72 0.964032
Target:  5'- gCGCGGAAAuc--CGCCGCGgcGGugGCg -3'
miRNA:   3'- -GCGCUUUUuuuuGUGGCGC--CCugCGg -5'
29719 5' -49.8 NC_006273.1 + 87943 0.72 0.965993
Target:  5'- uCGCcGAGAAGAAgACCGCcacccccgacgccGGACGCCg -3'
miRNA:   3'- -GCGcUUUUUUUUgUGGCGc------------CCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 30470 0.72 0.967259
Target:  5'- gGCGGAGGAcagcguuuucacGAGCA-CGCGGGcgcgcaGCGCCa -3'
miRNA:   3'- gCGCUUUUU------------UUUGUgGCGCCC------UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 129519 0.72 0.967259
Target:  5'- gCGCGAcccGGAGAAugGCCgGCGcuGCGCCg -3'
miRNA:   3'- -GCGCU---UUUUUUugUGG-CGCccUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 118675 0.72 0.967259
Target:  5'- uGCGggGuc-GACugCGUGGGGUGCUg -3'
miRNA:   3'- gCGCuuUuuuUUGugGCGCCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 20330 0.72 0.970275
Target:  5'- aCGCGGGcgucuGAGACAucCCGCGGGAaGCg -3'
miRNA:   3'- -GCGCUUuu---UUUUGU--GGCGCCCUgCGg -5'
29719 5' -49.8 NC_006273.1 + 100307 0.73 0.953034
Target:  5'- gCGCGAGAAGGAGCACaCGUaGGccauGGCGCg -3'
miRNA:   3'- -GCGCUUUUUUUUGUG-GCG-CC----CUGCGg -5'
29719 5' -49.8 NC_006273.1 + 120921 0.73 0.944561
Target:  5'- cCGCGGAAGugGAGGCGCuCGCcauGGCGCCg -3'
miRNA:   3'- -GCGCUUUU--UUUUGUG-GCGcc-CUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 179221 0.74 0.939973
Target:  5'- gCGCGGugacguACGCCGCGGGGCu-- -3'
miRNA:   3'- -GCGCUuuuuuuUGUGGCGCCCUGcgg -5'
29719 5' -49.8 NC_006273.1 + 126130 0.75 0.90742
Target:  5'- aCGCGAAAGAGGuccuGCA-CGCGG-ACGCCc -3'
miRNA:   3'- -GCGCUUUUUUU----UGUgGCGCCcUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 132723 0.75 0.913444
Target:  5'- uGCGAGugguGAGAGCGCCGgGGaGACGaCg -3'
miRNA:   3'- gCGCUUu---UUUUUGUGGCgCC-CUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 127208 0.75 0.913444
Target:  5'- aCGCGGuacguccGAAACGCCGUGGuGucGCGCCu -3'
miRNA:   3'- -GCGCUuuu----UUUUGUGGCGCC-C--UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 158696 0.74 0.924774
Target:  5'- cCGUGAGGcAGGGCACaCGCGGGuCGgCg -3'
miRNA:   3'- -GCGCUUUuUUUUGUG-GCGCCCuGCgG- -5'
29719 5' -49.8 NC_006273.1 + 195951 0.74 0.933149
Target:  5'- gGCGuccaccggguAGAACcCCGCGGGcCGCCg -3'
miRNA:   3'- gCGCuuuu------UUUUGuGGCGCCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 97341 0.74 0.935146
Target:  5'- uCGaGAAGAAAGAgACCGCGucucuGGACGCUc -3'
miRNA:   3'- -GCgCUUUUUUUUgUGGCGC-----CCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 127450 0.74 0.935146
Target:  5'- uGCGGuaguGAAAGAGCaACUGCGgugguaGGGCGCCa -3'
miRNA:   3'- gCGCU----UUUUUUUG-UGGCGC------CCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 119167 0.74 0.935146
Target:  5'- cCGUGGAAAGAGACcggcgcgcaGCUGCaccugGGGACGCUu -3'
miRNA:   3'- -GCGCUUUUUUUUG---------UGGCG-----CCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 41805 0.74 0.939973
Target:  5'- uGCGggGAaacGAGACugaaaGCCGCGuGACGCUg -3'
miRNA:   3'- gCGCuuUU---UUUUG-----UGGCGCcCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 60305 0.72 0.970275
Target:  5'- cCGuCGGGAGAcgGCgACU-CGGGACGCCa -3'
miRNA:   3'- -GC-GCUUUUUuuUG-UGGcGCCCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.