miRNA display CGI


Results 1 - 20 of 452 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 5' -49.8 NC_006273.1 + 1065 1.14 0.009756
Target:  5'- cCGCGAAAAAAAACACCGCGGGACGCCa -3'
miRNA:   3'- -GCGCUUUUUUUUGUGGCGCCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 56976 0.74 0.919229
Target:  5'- gGCGgcAAGAAGCacgACCGCGGuGGCGgCg -3'
miRNA:   3'- gCGCuuUUUUUUG---UGGCGCC-CUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 117884 0.74 0.93008
Target:  5'- aCGCGggG----GCGCCGUaGGACGCg -3'
miRNA:   3'- -GCGCuuUuuuuUGUGGCGcCCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 72832 0.66 0.999816
Target:  5'- cCGCGGucgccgcaGCUGCGGGGCcucaucgcaGCCu -3'
miRNA:   3'- -GCGCUuuuuuuugUGGCGCCCUG---------CGG- -5'
29719 5' -49.8 NC_006273.1 + 234275 0.8 0.695363
Target:  5'- uGCGucagcuguCGCCGCGGGACGCg -3'
miRNA:   3'- gCGCuuuuuuuuGUGGCGCCCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 56638 0.79 0.753683
Target:  5'- cCGCGAugGAGAAAACGCCgGCGGaGACGaCg -3'
miRNA:   3'- -GCGCU--UUUUUUUGUGG-CGCC-CUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 98038 0.78 0.771759
Target:  5'- cCGCccGAGAGAACACCGUcuucuccGGGACGUCu -3'
miRNA:   3'- -GCGcuUUUUUUUGUGGCG-------CCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 170874 0.78 0.782022
Target:  5'- cCGCGAAGGccuACGCCGUGGGGCaguuugagaaGCCc -3'
miRNA:   3'- -GCGCUUUUuuuUGUGGCGCCCUG----------CGG- -5'
29719 5' -49.8 NC_006273.1 + 61333 0.76 0.858831
Target:  5'- aCGUGGGAAGAGAC-CCG-GGGACGgCu -3'
miRNA:   3'- -GCGCUUUUUUUUGuGGCgCCCUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 194618 0.75 0.894667
Target:  5'- uGCGggGAcGGGGCGUCGCGGGAUGgCg -3'
miRNA:   3'- gCGCuuUU-UUUUGUGGCGCCCUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 151953 0.76 0.866432
Target:  5'- gGCGguGGAGGACaACCGCcuGGugGCCa -3'
miRNA:   3'- gCGCuuUUUUUUG-UGGCGc-CCugCGG- -5'
29719 5' -49.8 NC_006273.1 + 75965 0.77 0.843019
Target:  5'- aGCGugcu-GAGCGCCGCacGGGGCGCg -3'
miRNA:   3'- gCGCuuuuuUUUGUGGCG--CCCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 156974 0.84 0.48318
Target:  5'- aCGCGAGAAGGGGCcgggguCCGCGGGcacCGCCg -3'
miRNA:   3'- -GCGCUUUUUUUUGu-----GGCGCCCu--GCGG- -5'
29719 5' -49.8 NC_006273.1 + 94480 0.76 0.866432
Target:  5'- cCGCGGAcu---GCGCCGgGGGGCGgCg -3'
miRNA:   3'- -GCGCUUuuuuuUGUGGCgCCCUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 129447 0.81 0.616726
Target:  5'- aCGgGAAAAAugcuguuccacguacAggUGCCGCGGGugGCCa -3'
miRNA:   3'- -GCgCUUUUU---------------UuuGUGGCGCCCugCGG- -5'
29719 5' -49.8 NC_006273.1 + 40464 0.77 0.809146
Target:  5'- gGCGcc--AAAACGCCGUcGGACGCCg -3'
miRNA:   3'- gCGCuuuuUUUUGUGGCGcCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 209532 0.75 0.894667
Target:  5'- uGCGGAu----ACGCCGCcGGGCGCUg -3'
miRNA:   3'- gCGCUUuuuuuUGUGGCGcCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 221633 0.74 0.93008
Target:  5'- gCGCGggGu--GGCGgaGCGGGgaGCGCCg -3'
miRNA:   3'- -GCGCuuUuuuUUGUggCGCCC--UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 82794 0.81 0.65363
Target:  5'- aGCGGccu-GGGCGCCGCGGGAaagGCCg -3'
miRNA:   3'- gCGCUuuuuUUUGUGGCGCCCUg--CGG- -5'
29719 5' -49.8 NC_006273.1 + 178133 0.78 0.769876
Target:  5'- cCGCGGAAAAAAACgauuauuaccgaguACCGCauuacuGGGACGCg -3'
miRNA:   3'- -GCGCUUUUUUUUG--------------UGGCG------CCCUGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.