miRNA display CGI


Results 21 - 40 of 452 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29719 5' -49.8 NC_006273.1 + 72632 0.74 0.935146
Target:  5'- gGCGGu--AGGACA-CGCGGG-CGCCg -3'
miRNA:   3'- gCGCUuuuUUUUGUgGCGCCCuGCGG- -5'
29719 5' -49.8 NC_006273.1 + 117884 0.74 0.93008
Target:  5'- aCGCGggG----GCGCCGUaGGACGCg -3'
miRNA:   3'- -GCGCuuUuuuuUGUGGCGcCCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 75965 0.77 0.843019
Target:  5'- aGCGugcu-GAGCGCCGCacGGGGCGCg -3'
miRNA:   3'- gCGCuuuuuUUUGUGGCG--CCCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 82794 0.81 0.65363
Target:  5'- aGCGGccu-GGGCGCCGCGGGAaagGCCg -3'
miRNA:   3'- gCGCUuuuuUUUGUGGCGCCCUg--CGG- -5'
29719 5' -49.8 NC_006273.1 + 121071 0.72 0.964032
Target:  5'- uCGCGcccGAAGAGGACACCGaCGaGGAUuCCg -3'
miRNA:   3'- -GCGC---UUUUUUUUGUGGC-GC-CCUGcGG- -5'
29719 5' -49.8 NC_006273.1 + 113900 0.73 0.944561
Target:  5'- cCGgGAAAGAGugcgacagcGugACCGCGGGGuCGCg -3'
miRNA:   3'- -GCgCUUUUUU---------UugUGGCGCCCU-GCGg -5'
29719 5' -49.8 NC_006273.1 + 56976 0.74 0.919229
Target:  5'- gGCGgcAAGAAGCacgACCGCGGuGGCGgCg -3'
miRNA:   3'- gCGCuuUUUUUUG---UGGCGCC-CUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 129447 0.81 0.616726
Target:  5'- aCGgGAAAAAugcuguuccacguacAggUGCCGCGGGugGCCa -3'
miRNA:   3'- -GCgCUUUUU---------------UuuGUGGCGCCCugCGG- -5'
29719 5' -49.8 NC_006273.1 + 152284 0.73 0.944561
Target:  5'- cCGUGGuGGGAGGAC-CCGCGGGccACGUCg -3'
miRNA:   3'- -GCGCU-UUUUUUUGuGGCGCCC--UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 156974 0.84 0.48318
Target:  5'- aCGCGAGAAGGGGCcgggguCCGCGGGcacCGCCg -3'
miRNA:   3'- -GCGCUUUUUUUUGu-----GGCGCCCu--GCGG- -5'
29719 5' -49.8 NC_006273.1 + 221633 0.74 0.93008
Target:  5'- gCGCGggGu--GGCGgaGCGGGgaGCGCCg -3'
miRNA:   3'- -GCGCuuUuuuUUGUggCGCCC--UGCGG- -5'
29719 5' -49.8 NC_006273.1 + 41485 0.74 0.935146
Target:  5'- cCGCGGugacacAAACAgCGUcucGGGACGCCg -3'
miRNA:   3'- -GCGCUuuuu--UUUGUgGCG---CCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 94480 0.76 0.866432
Target:  5'- cCGCGGAcu---GCGCCGgGGGGCGgCg -3'
miRNA:   3'- -GCGCUUuuuuuUGUGGCgCCCUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 61333 0.76 0.858831
Target:  5'- aCGUGGGAAGAGAC-CCG-GGGACGgCu -3'
miRNA:   3'- -GCGCUUUUUUUUGuGGCgCCCUGCgG- -5'
29719 5' -49.8 NC_006273.1 + 98038 0.78 0.771759
Target:  5'- cCGCccGAGAGAACACCGUcuucuccGGGACGUCu -3'
miRNA:   3'- -GCGcuUUUUUUUGUGGCG-------CCCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 234275 0.8 0.695363
Target:  5'- uGCGucagcuguCGCCGCGGGACGCg -3'
miRNA:   3'- gCGCuuuuuuuuGUGGCGCCCUGCGg -5'
29719 5' -49.8 NC_006273.1 + 81088 0.72 0.970275
Target:  5'- aGaCGggGGGAAACACCGCcguggaucagGGGAUcCCa -3'
miRNA:   3'- gC-GCuuUUUUUUGUGGCG----------CCCUGcGG- -5'
29719 5' -49.8 NC_006273.1 + 228685 0.72 0.964032
Target:  5'- uCGCGuuGAcacuGGAGCGCCGCGGucucGAUGCg -3'
miRNA:   3'- -GCGCuuUU----UUUUGUGGCGCC----CUGCGg -5'
29719 5' -49.8 NC_006273.1 + 137501 0.73 0.960588
Target:  5'- cCGCGGuccGAAAAGCAgcucCUGCGguuuGGGCGCCg -3'
miRNA:   3'- -GCGCUu--UUUUUUGU----GGCGC----CCUGCGG- -5'
29719 5' -49.8 NC_006273.1 + 222781 0.73 0.954617
Target:  5'- gGCGuuuucacuACGCCGUGGacGACGCCg -3'
miRNA:   3'- gCGCuuuuuuu-UGUGGCGCC--CUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.